**/*.{err,gz,html,log,pdf,stderr,stdout}
**/nf.command.*
bactopia-runs/**/nf-reports/*.{dot,html}

**/*.{bionj,cdhit_clusters,clstr,contree,csv,dot,edges,embl,faa,ffn,gfa,gff,iqtree,mldist,newick,nex,nwk,output,reinflated,Rtab,tab,temp,treefile,tsv,txt,ufboot}
**/*.distance.tsv
**/*clustered_proteins*
**/gene_presence_absence.csv
**/gene_presence_absence_roary.csv
**/pan_sequences.representative.fasta*
