---------------------------------------------------------------------------
| Key                 | Values                                            |
---------------------------------------------------------------------------
| speciesTree         | example/data/Species.nwk                          |
| target              | A0                                                |
| extantSpeciesFilter |                                                   |
| genesFiles          | example/data/genes/genes.%s.list.bz2              |
| ancGenesFiles       | example/results/ancGenes/all/ancGenes.%s.list.bz2 |
| OUT.pairwise        | example/results/pairwise/pairs-all/%s.list.bz2    |
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Loading genome of example/results/ancGenes/all/ancGenes.A0.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A1.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A2.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A3.list.bz2 ... (ancestral genes) OK
time for loading 0.7220218181610107
Loading genome of example/data/genes/genes.M1.list.bz2 ... (Ensembl) OK
Extraction of gene pairs from M1  ... OK
Loading genome of example/data/genes/genes.M2.list.bz2 ... (Ensembl) OK
Extraction of gene pairs from M2  ... OK
Loading genome of example/data/genes/genes.M3.list.bz2 ... (Ensembl) OK
Extraction of gene pairs from M3  ... OK
Loading genome of example/data/genes/genes.M4.list.bz2 ... (Ensembl) OK
Extraction of gene pairs from M4  ... OK
Loading genome of example/data/genes/genes.M5.list.bz2 ... (Ensembl) OK
Extraction of gene pairs from M5  ... OK
time for task1 1.6778621673583984
Number of pairs for A0 [('A1', 20840), ('A2', 18579)]
Intersection between A1 and A2 ... OK
12550 conserved pairs between descendants A0
Number of pairs for A1 [('A3', 19450), ('M3', 15814)]
Intersection between A3 and M3 ... OK
12117 conserved pairs between descendants A1
Number of pairs for A2 [('M4', 12867), ('M5', 12294)]
Intersection between M4 and M5 ... OK
6409 conserved pairs between descendants A2
Number of pairs for A3 [('M1', 17445), ('M2', 17519)]
Intersection between M1 and M2 ... OK
14063 conserved pairs between descendants A3
time for task 2 1.0856258869171143
12550 conserved pairs for A0
15692 conserved pairs for A1
13292 conserved pairs for A2
16694 conserved pairs for A3
Elapsed time task3: 0.5652670860290527 4.050825834274292
