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| Key                 | Values                                                                                                                 |
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| speciesTree         | example/data/Species.nwk                                                                                               |
| target              | A0                                                                                                                     |
| extantSpeciesFilter |                                                                                                                        |
| genesFiles          | example/data/genes/genes.%s.list.bz2                                                                                   |
| ancGenesFiles       | example/results/filtBlocks/denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-70/blocks.%s.list.bz2    |
| iniAncGenesFiles    | example/results/ancGenes/all/ancGenes.%s.list.bz2                                                                      |
| OUT.pairwise        | example/results/pairwise/adjacencies-denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-70/%s.list.bz2 |
| anchorSize          | 2                                                                                                                      |
| nbThreads           | 1                                                                                                                      |
| LOG.pairwise        | example/results/pairwise/adjacencies-denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-70/%s.log.bz2  |
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Loading genome of example/data/genes/genes.M1.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M2.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M3.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M4.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M5.list.bz2 ... (Ensembl) OK
Loading genome of example/results/ancGenes/all/ancGenes.A0.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A1.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A2.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A3.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/filtBlocks/denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-70/blocks.A0.list.bz2 ... (ancestral genome: diags) OK
Loading genome of example/results/filtBlocks/denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-70/blocks.A1.list.bz2 ... (ancestral genome: diags) OK
Loading genome of example/results/filtBlocks/denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-70/blocks.A2.list.bz2 ... (ancestral genome: diags) OK
Loading genome of example/results/filtBlocks/denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-70/blocks.A3.list.bz2 ... (ancestral genome: diags) OK
Elapsed time: 5.21952486038208
Gene order comparison between A0 and M1 ... 2 [5/11/19] [13/21/35] 107 [14.30/13.60-781] 298 adjacencies / 400 blocks (anchor size: 2)
Gene order comparison between A0 and M2 ... 2 [4/10/17] [12/19/33] 87 [12.94/12.03-851] 286 adjacencies / 400 blocks (anchor size: 2)
Gene order comparison between A0 and M3 ... 2 [4/10/18] [12/21/34] 82 [13.23/12.70-789] 299 adjacencies / 397 blocks (anchor size: 2)
Gene order comparison between A0 and M4 ... 2 [10/15/27] [18/29/49] 149 [20.20/17.79-489] 354 adjacencies / 400 blocks (anchor size: 2)
Gene order comparison between A0 and M5 ... 2 [3/5/9] [5/9/14] 49 [6.59/5.25-1520] 144 adjacencies / 395 blocks (anchor size: 2)
Gene order comparison between A1 and M1 ... 2 [4/14/32] [23/40/66] 131 [21.79/22.86-539] 92 adjacencies / 181 blocks (anchor size: 2)
Gene order comparison between A1 and M2 ... 2 [4/14/29] [20/34/51] 124 [19.54/18.95-597] 89 adjacencies / 181 blocks (anchor size: 2)
Gene order comparison between A1 and M3 ... 2 [3/16/38] [30/48/74] 153 [25.37/26.58-447] 102 adjacencies / 181 blocks (anchor size: 2)
Gene order comparison between A1 and M4 ... 2 [2/8/20] [14/25/38] 109 [13.40/14.08-704] 91 adjacencies / 179 blocks (anchor size: 2)
Gene order comparison between A1 and M5 ... 2 [2/4/7] [5/8/13] 32 [5.74/4.70-1669] 37 adjacencies / 179 blocks (anchor size: 2)
Gene order comparison between A2 and M1 ... 2 [3/7/15] [10/18/31] 107 [11.52/11.79-907] 119 adjacencies / 237 blocks (anchor size: 2)
Gene order comparison between A2 and M2 ... 2 [3/7/14] [10/17/28] 87 [10.62/10.27-973] 112 adjacencies / 237 blocks (anchor size: 2)
Gene order comparison between A2 and M3 ... 2 [3/7/16] [10/18/31] 82 [11.29/11.34-873] 122 adjacencies / 237 blocks (anchor size: 2)
Gene order comparison between A2 and M4 ... 2 [18/27/44] [28/44/70] 162 [33.76/24.75-277] 202 adjacencies / 237 blocks (anchor size: 2)
Gene order comparison between A2 and M5 ... 2 [3/6/11] [7/12/20] 54 [8.28/7.26-1180] 5 adjacencies / 237 blocks (anchor size: 2)
Gene order comparison between A3 and M1 ... 2 [5/20/63] [52/79/134] 227 [40.75/47.00-307] 26 adjacencies / 72 blocks (anchor size: 2)
Gene order comparison between A3 and M2 ... 2 [4/15/50] [40/71/101] 235 [32.42/37.62-384] 18 adjacencies / 72 blocks (anchor size: 2)
Gene order comparison between A3 and M3 ... 2 [2/8/21] [16/34/58] 147 [15.80/19.05-714] 23 adjacencies / 72 blocks (anchor size: 2)
Gene order comparison between A3 and M4 ... 2 [2/6/15] [11/21/33] 75 [10.94/12.21-838] 23 adjacencies / 72 blocks (anchor size: 2)
Gene order comparison between A3 and M5 ... 2 [2/4/7] [4/7/12] 48 [5.37/4.54-1743] 13 adjacencies / 72 blocks (anchor size: 2)
