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| Key                 | Values                                                                                                                 |
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| speciesTree         | example/data/Species.nwk                                                                                               |
| target              | A0                                                                                                                     |
| extantSpeciesFilter |                                                                                                                        |
| genesFiles          | example/data/genes/genes.%s.list.bz2                                                                                   |
| ancGenesFiles       | example/results/filtBlocks/denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-50/blocks.%s.list.bz2    |
| iniAncGenesFiles    | example/results/ancGenes/all/ancGenes.%s.list.bz2                                                                      |
| OUT.pairwise        | example/results/pairwise/adjacencies-denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-50/%s.list.bz2 |
| anchorSize          | 2                                                                                                                      |
| nbThreads           | 1                                                                                                                      |
| LOG.pairwise        | example/results/pairwise/adjacencies-denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-50/%s.log.bz2  |
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Loading genome of example/data/genes/genes.M1.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M2.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M3.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M4.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M5.list.bz2 ... (Ensembl) OK
Loading genome of example/results/ancGenes/all/ancGenes.A0.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A1.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A2.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A3.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/filtBlocks/denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-50/blocks.A0.list.bz2 ... (ancestral genome: diags) OK
Loading genome of example/results/filtBlocks/denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-50/blocks.A1.list.bz2 ... (ancestral genome: diags) OK
Loading genome of example/results/filtBlocks/denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-50/blocks.A2.list.bz2 ... (ancestral genome: diags) OK
Loading genome of example/results/filtBlocks/denovo-size-1.0-1.0.fillin-all.fusion-all.insertion-all-propLength-50/blocks.A3.list.bz2 ... (ancestral genome: diags) OK
Elapsed time: 4.1736369132995605
Gene order comparison between A0 and M1 ... 2 [5/13/27] [19/29/45] 107 [18.34/16.92-433] 109 adjacencies / 175 blocks (anchor size: 2)
Gene order comparison between A0 and M2 ... 2 [5/12/24] [16/28/38] 104 [16.29/14.78-481] 102 adjacencies / 175 blocks (anchor size: 2)
Gene order comparison between A0 and M3 ... 2 [5/13/25] [18/28/41] 82 [17.31/15.29-432] 108 adjacencies / 175 blocks (anchor size: 2)
Gene order comparison between A0 and M4 ... 2 [23/30/43] [28/40/58] 149 [35.40/19.49-196] 135 adjacencies / 175 blocks (anchor size: 2)
Gene order comparison between A0 and M5 ... 2 [3/5/9] [6/10/16] 49 [7.03/5.77-1027] 40 adjacencies / 175 blocks (anchor size: 2)
Gene order comparison between A1 and M1 ... 2 [6/18/41] [29/50/76] 131 [27.55/26.75-308] 35 adjacencies / 93 blocks (anchor size: 2)
Gene order comparison between A1 and M2 ... 2 [4/14/29] [21/35/60] 124 [20.43/21.00-411] 33 adjacencies / 93 blocks (anchor size: 2)
Gene order comparison between A1 and M3 ... 2 [5/22/56] [43/62/84] 183 [33.34/32.09-245] 40 adjacencies / 93 blocks (anchor size: 2)
Gene order comparison between A1 and M4 ... 2 [3/10/21] [15/28/44] 109 [14.98/15.68-454] 34 adjacencies / 92 blocks (anchor size: 2)
Gene order comparison between A1 and M5 ... 2 [2/4/8] [5/8/13] 31 [5.99/4.71-1162] 15 adjacencies / 92 blocks (anchor size: 2)
Gene order comparison between A2 and M1 ... 2 [4/9/17] [11/21/37] 107 [13.03/13.49-579] 44 adjacencies / 115 blocks (anchor size: 2)
Gene order comparison between A2 and M2 ... 2 [4/8/15] [10/18/31] 87 [11.55/11.45-650] 42 adjacencies / 115 blocks (anchor size: 2)
Gene order comparison between A2 and M3 ... 2 [4/9/17] [11/21/36] 82 [12.91/12.93-553] 44 adjacencies / 115 blocks (anchor size: 2)
Gene order comparison between A2 and M4 ... 2 [36/44/61] [43/54/81] 162 [48.52/27.01-138] 83 adjacencies / 115 blocks (anchor size: 2)
Gene order comparison between A2 and M5 ... 2 [3/6/11] [7/13/21] 54 [8.76/7.75-805] 3 adjacencies / 115 blocks (anchor size: 2)
Gene order comparison between A3 and M1 ... 2 [6/24/67] [59/111/164] 237 [47.79/54.36-189] 10 adjacencies / 38 blocks (anchor size: 2)
Gene order comparison between A3 and M2 ... 2 [4/17/52] [46/81/116] 235 [35.37/42.22-254] 7 adjacencies / 38 blocks (anchor size: 2)
Gene order comparison between A3 and M3 ... 2 [3/8/23] [19/38/61] 147 [17.04/20.87-475] 6 adjacencies / 38 blocks (anchor size: 2)
Gene order comparison between A3 and M4 ... 2 [3/7/18] [12/23/36] 75 [12.40/13.07-535] 6 adjacencies / 38 blocks (anchor size: 2)
Gene order comparison between A3 and M5 ... 2 [2/4/7] [4/7/13] 48 [5.54/4.75-1223] 3 adjacencies / 38 blocks (anchor size: 2)
