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| Key                 | Values                                                                     |
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| speciesTree         | example/data/Species.nwk                                                   |
| target              | A0                                                                         |
| extantSpeciesFilter |                                                                            |
| genesFiles          | example/data/genes/genes.%s.list.bz2                                       |
| ancGenesFiles       | example/results/filtBlocks/best-pass1-fixedLength-50/blocks.%s.list.bz2    |
| iniAncGenesFiles    | example/results/ancGenes/all/ancGenes.%s.list.bz2                          |
| OUT.pairwise        | example/results/pairwise/adjacencies-best-pass1-fixedLength-50/%s.list.bz2 |
| anchorSize          | 2                                                                          |
| nbThreads           | 1                                                                          |
| LOG.pairwise        | example/results/pairwise/adjacencies-best-pass1-fixedLength-50/%s.log.bz2  |
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Loading genome of example/data/genes/genes.M1.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M2.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M3.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M4.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M5.list.bz2 ... (Ensembl) OK
Loading genome of example/results/ancGenes/all/ancGenes.A0.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A1.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A2.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A3.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/filtBlocks/best-pass1-fixedLength-50/blocks.A0.list.bz2 ... (ancestral genome: diags) OK
Loading genome of example/results/filtBlocks/best-pass1-fixedLength-50/blocks.A1.list.bz2 ... (ancestral genome: diags) OK
Loading genome of example/results/filtBlocks/best-pass1-fixedLength-50/blocks.A2.list.bz2 ... (ancestral genome: diags) OK
Loading genome of example/results/filtBlocks/best-pass1-fixedLength-50/blocks.A3.list.bz2 ... (ancestral genome: diags) OK
Elapsed time: 4.019093036651611
Gene order comparison between A0 and M1 ... 2 [5/14/30] [22/38/62] 107 [21.66/21.52-180] 23 adjacencies / 55 blocks (anchor size: 2)
Gene order comparison between A0 and M2 ... 2 [6/12/26] [17/32/53] 104 [18.43/17.85-210] 18 adjacencies / 55 blocks (anchor size: 2)
Gene order comparison between A0 and M3 ... 2 [6/14/27] [20/37/57] 82 [19.87/18.77-184] 20 adjacencies / 55 blocks (anchor size: 2)
Gene order comparison between A0 and M4 ... 2 [42/50/61] [49/59/75] 149 [50.97/24.42-67] 29 adjacencies / 55 blocks (anchor size: 2)
Gene order comparison between A0 and M5 ... 2 [3/5/9] [6/11/19] 49 [7.57/6.58-471] 4 adjacencies / 55 blocks (anchor size: 2)
Gene order comparison between A1 and M1 ... 2 [4/13/32] [23/48/72] 131 [22.80/24.96-487] 48 adjacencies / 104 blocks (anchor size: 2)
Gene order comparison between A1 and M2 ... 2 [4/12/27] [19/36/57] 139 [19.13/20.73-576] 39 adjacencies / 104 blocks (anchor size: 2)
Gene order comparison between A1 and M3 ... 2 [4/13/40] [30/55/77] 188 [25.69/28.67-418] 44 adjacencies / 104 blocks (anchor size: 2)
Gene order comparison between A1 and M4 ... 2 [3/10/23] [18/32/51] 149 [16.70/18.11-538] 32 adjacencies / 103 blocks (anchor size: 2)
Gene order comparison between A1 and M5 ... 2 [2/4/8] [5/9/14] 37 [6.14/5.20-1498] 13 adjacencies / 103 blocks (anchor size: 2)
Gene order comparison between A2 and M1 ... 2 [4/8/17] [12/22/39] 107 [13.30/14.13-472] 30 adjacencies / 85 blocks (anchor size: 2)
Gene order comparison between A2 and M2 ... 2 [4/7/16] [11/19/33] 87 [11.91/12.12-525] 27 adjacencies / 85 blocks (anchor size: 2)
Gene order comparison between A2 and M3 ... 2 [4/9/18] [12/21/37] 82 [13.18/13.28-452] 31 adjacencies / 85 blocks (anchor size: 2)
Gene order comparison between A2 and M4 ... 2 [39/50/66] [48/63/87] 162 [52.31/29.44-106] 54 adjacencies / 85 blocks (anchor size: 2)
Gene order comparison between A2 and M5 ... 2 [3/6/11] [7/13/22] 54 [8.95/7.98-657] 3 adjacencies / 85 blocks (anchor size: 2)
Gene order comparison between A3 and M1 ... 2 [5/19/57] [46/74/127] 227 [37.16/43.84-379] 40 adjacencies / 97 blocks (anchor size: 2)
Gene order comparison between A3 and M2 ... 2 [4/15/47] [38/63/99] 235 [30.83/35.68-454] 29 adjacencies / 97 blocks (anchor size: 2)
Gene order comparison between A3 and M3 ... 2 [2/8/20] [15/32/53] 147 [14.98/18.17-843] 40 adjacencies / 97 blocks (anchor size: 2)
Gene order comparison between A3 and M4 ... 2 [2/6/15] [11/21/33] 75 [10.67/11.93-966] 37 adjacencies / 97 blocks (anchor size: 2)
Gene order comparison between A3 and M5 ... 2 [2/4/7] [4/7/12] 48 [5.28/4.43-1989] 19 adjacencies / 97 blocks (anchor size: 2)
