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| Key                 | Values                                                                     |
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| speciesTree         | example/data/Species.nwk                                                   |
| target              | A0                                                                         |
| extantSpeciesFilter |                                                                            |
| genesFiles          | example/data/genes/genes.%s.list.bz2                                       |
| ancGenesFiles       | example/results/filtBlocks/best-pass1-fixedLength-20/blocks.%s.list.bz2    |
| iniAncGenesFiles    | example/results/ancGenes/all/ancGenes.%s.list.bz2                          |
| OUT.pairwise        | example/results/pairwise/adjacencies-best-pass1-fixedLength-20/%s.list.bz2 |
| anchorSize          | 2                                                                          |
| nbThreads           | 1                                                                          |
| LOG.pairwise        | example/results/pairwise/adjacencies-best-pass1-fixedLength-20/%s.log.bz2  |
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Loading genome of example/data/genes/genes.M1.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M2.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M3.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M4.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M5.list.bz2 ... (Ensembl) OK
Loading genome of example/results/ancGenes/all/ancGenes.A0.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A1.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A2.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A3.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/filtBlocks/best-pass1-fixedLength-20/blocks.A0.list.bz2 ... (ancestral genome: diags) OK
Loading genome of example/results/filtBlocks/best-pass1-fixedLength-20/blocks.A1.list.bz2 ... (ancestral genome: diags) OK
Loading genome of example/results/filtBlocks/best-pass1-fixedLength-20/blocks.A2.list.bz2 ... (ancestral genome: diags) OK
Loading genome of example/results/filtBlocks/best-pass1-fixedLength-20/blocks.A3.list.bz2 ... (ancestral genome: diags) OK
Elapsed time: 5.248715877532959
Gene order comparison between A0 and M1 ... 2 [5/13/24] [17/27/42] 107 [17.59/15.95-503] 139 adjacencies / 218 blocks (anchor size: 2)
Gene order comparison between A0 and M2 ... 2 [4/11/22] [15/25/36] 104 [15.17/13.96-575] 135 adjacencies / 218 blocks (anchor size: 2)
Gene order comparison between A0 and M3 ... 2 [5/13/23] [17/25/39] 82 [16.41/14.57-507] 143 adjacencies / 218 blocks (anchor size: 2)
Gene order comparison between A0 and M4 ... 2 [19/26/39] [25/38/57] 149 [30.54/19.63-254] 177 adjacencies / 218 blocks (anchor size: 2)
Gene order comparison between A0 and M5 ... 2 [3/5/9] [6/9/16] 49 [7.00/5.66-1149] 63 adjacencies / 218 blocks (anchor size: 2)
Gene order comparison between A1 and M1 ... 2 [4/12/27] [21/38/64] 131 [20.20/22.19-680] 111 adjacencies / 188 blocks (anchor size: 2)
Gene order comparison between A1 and M2 ... 2 [4/12/26] [18/34/52] 139 [18.20/19.04-750] 101 adjacencies / 188 blocks (anchor size: 2)
Gene order comparison between A1 and M3 ... 2 [2/10/27] [23/45/70] 188 [20.02/24.79-659] 104 adjacencies / 188 blocks (anchor size: 2)
Gene order comparison between A1 and M4 ... 2 [2/8/20] [15/27/45] 149 [14.08/16.10-783] 91 adjacencies / 184 blocks (anchor size: 2)
Gene order comparison between A1 and M5 ... 2 [2/4/8] [5/8/13] 37 [5.88/5.00-1915] 28 adjacencies / 184 blocks (anchor size: 2)
Gene order comparison between A2 and M1 ... 2 [4/7/16] [10/19/32] 107 [11.77/12.06-850] 94 adjacencies / 211 blocks (anchor size: 2)
Gene order comparison between A2 and M2 ... 2 [3/7/14] [10/17/28] 87 [10.72/10.46-924] 89 adjacencies / 211 blocks (anchor size: 2)
Gene order comparison between A2 and M3 ... 2 [3/8/16] [10/19/32] 82 [11.49/11.57-821] 102 adjacencies / 211 blocks (anchor size: 2)
Gene order comparison between A2 and M4 ... 2 [20/30/46] [30/46/70] 162 [35.73/25.26-250] 176 adjacencies / 211 blocks (anchor size: 2)
Gene order comparison between A2 and M5 ... 2 [3/6/11] [7/12/20] 54 [8.41/7.34-1115] 5 adjacencies / 211 blocks (anchor size: 2)
Gene order comparison between A3 and M1 ... 2 [4/17/46] [37/67/126] 227 [32.68/40.57-476] 77 adjacencies / 143 blocks (anchor size: 2)
Gene order comparison between A3 and M2 ... 2 [4/14/41] [34/56/96] 235 [28.28/33.47-548] 55 adjacencies / 143 blocks (anchor size: 2)
Gene order comparison between A3 and M3 ... 2 [2/6/18] [15/30/51] 147 [13.60/17.18-1013] 72 adjacencies / 140 blocks (anchor size: 2)
Gene order comparison between A3 and M4 ... 2 [2/5/14] [10/20/32] 75 [10.16/11.52-1126] 68 adjacencies / 140 blocks (anchor size: 2)
Gene order comparison between A3 and M5 ... 2 [2/4/7] [4/7/11] 48 [5.21/4.36-2221] 37 adjacencies / 139 blocks (anchor size: 2)
