------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
| Key           | Values                                                                                                                                                                                   |
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
| speciesTree   | example/data/Species.nwk                                                                                                                                                                 |
| target        | A0                                                                                                                                                                                       |
| pairwise      | example/results/pairwise/pairs-all/%s.list.bz2                                                                                                                                           |
| IN.ancBlocks  | example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33/blocks.%s.list.bz2 |
| OUT.ancBlocks | example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all/blocks.%s.list.bz2 |
| LOG.ancGraph  | example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all/graph.%s.txt.bz2 |
| nbThreads     | 1                                                                                                                                                                                        |
| minimalWeight | 1                                                                                                                                                                                        |
| mustExtend    | False                                                                                                                                                                                    |
| loop          | False                                                                                                                                                                                    |
| timeout       | 150                                                                                                                                                                                      |
| func          | 0,32|100,40t|10000                                                                                                                                                                       |
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Targets: ['A0', 'A1', 'A2', 'A3']
total computation time 9.884710788726807
Loading ancestral blocks of example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33/blocks.A0.list.bz2 ... 2 [4/9/21] [15/32/55] 169 [16.37/19.10-762] + 3801 singletons OK
Building graphs ... OK
adding singletons ... OK
Output blocks of A0 2 [4/10/22] [15/33/58] 172 [17.15/19.93-762] + 3203 singletons
Loading ancestral blocks of example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33/blocks.A1.list.bz2 ... 2 [6/16/41] [32/59/94] 252 [28.95/33.85-474] + 3619 singletons OK
Building graphs ... OK
adding singletons ... OK
Output blocks of A1 2 [6/17/44] [34/62/100] 273 [31.10/36.46-474] + 2596 singletons
Loading ancestral blocks of example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33/blocks.A2.list.bz2 ... 2 [5/10/25] [19/44/72] 181 [20.67/24.69-631] + 2529 singletons OK
Building graphs ... OK
adding singletons ... OK
Output blocks of A2 2 [5/11/26] [20/46/74] 185 [21.41/25.52-631] + 2057 singletons
Loading ancestral blocks of example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33/blocks.A3.list.bz2 ... 2 [9/37/91] [74/140/253] 529 [68.68/90.06-222] + 2872 singletons OK
Building graphs ... OK
adding singletons ... OK
Output blocks of A3 2 [10/39/96] [82/147/271] 576 [73.06/96.22-222] + 1899 singletons
