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| Key               | Values                                                                                                                                                                               |
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| speciesTree       | example/data/Species.nwk                                                                                                                                                             |
| target            | A0                                                                                                                                                                                   |
| pairwise          | example/results/pairwise/pairs-all/%s.list.bz2                                                                                                                                       |
| IN.ancBlocks      | example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all.fusion-all/blocks.%s.list.bz2 |
| OUT.ancBlocks     | example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all.fusion-all.insertion-all/blocks.%s.list.bz2 |
| REF.ancBlocks     | example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all/blocks.%s.list.bz2 |
| LOG.ancGraph      | example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all.fusion-all.insertion-all/graph.%s.txt.bz2 |
| nbThreads         | 1                                                                                                                                                                                    |
| selectionFunction | newscore/float(oldscore) if oldscore else newscore                                                                                                                                   |
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Loading ancestral blocks of example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all.fusion-all/blocks.A0.list.bz2 ... 2 [3/7/17] [14/31/57] 172 [14.05/18.47-987] + 2409 singletons OK
Loading ancestral blocks of example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all/blocks.A0.list.bz2 ... 2 [4/10/22] [15/33/58] 172 [17.15/19.93-762] + 3203 singletons OK
Output blocks of  A0 2 [3/8/18] [14/32/57] 176 [15.05/19.23-944] + 2064 singletons
Loading ancestral blocks of example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all.fusion-all/blocks.A1.list.bz2 ... 2 [3/7/26] [27/60/99] 273 [21.75/32.39-719] + 1698 singletons OK
Loading ancestral blocks of example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all/blocks.A1.list.bz2 ... 2 [6/17/44] [34/62/100] 273 [31.10/36.46-474] + 2596 singletons OK
Output blocks of  A1 2 [4/11/35] [30/62/102] 285 [25.35/34.80-637] + 1188 singletons
Loading ancestral blocks of example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all.fusion-all/blocks.A2.list.bz2 ... 2 [3/7/20] [18/44/73] 185 [17.42/23.72-813] + 1409 singletons OK
Loading ancestral blocks of example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all/blocks.A2.list.bz2 ... 2 [5/11/26] [20/46/74] 185 [21.41/25.52-631] + 2057 singletons OK
Output blocks of  A2 2 [4/9/22] [18/44/74] 190 [18.59/24.56-782] + 1029 singletons
Loading ancestral blocks of example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all.fusion-all/blocks.A3.list.bz2 ... 2 [2/5/40] [68/144/249] 576 [38.67/77.09-436] + 1258 singletons OK
Loading ancestral blocks of example/results/ancBlocks/denovo-size-1.0-1.0.fillin-size-0.9-1.1.fusion-size-0.9-1.1.insertion-size-0.9-1.1.fillin-size-0.77-1.33.fusion-size-0.77-1.33.insertion-size-0.77-1.33.fillin-all/blocks.A3.list.bz2 ... 2 [10/39/96] [82/147/271] 576 [73.06/96.22-222] + 1899 singletons OK
Output blocks of  A3 2 [2/9/61] [74/148/254] 581 [48.54/85.00-353] + 983 singletons
Elapsed time: 0.9702351093292236
