-------------------------------------------------------------------------------------------
| Key                 | Values                                                            |
-------------------------------------------------------------------------------------------
| speciesTree         | example/data/Species.nwk                                          |
| target              | A0                                                                |
| minimalWeight       | 1                                                                 |
| anchorSize          | 2                                                                 |
| minChromLength      | 2                                                                 |
| nbThreads           | 1                                                                 |
| extantSpeciesFilter |                                                                   |
| IN.ancBlocks        | example/results/ancBlocks/denovo-all/blocks.%s.list.bz2           |
| LOG.ancGraph        | example/results/ancBlocks/denovo-all.scaffolds/graph.%s.txt.bz2   |
| OUT.ancBlocks       | example/results/ancBlocks/denovo-all.scaffolds/blocks.%s.list.bz2 |
| genesFiles          | example/data/genes/genes.%s.list.bz2                              |
| ancGenesFiles       | example/results/ancGenes/all/ancGenes.%s.list.bz2                 |
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Loading genome of example/results/ancGenes/all/ancGenes.A0.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A1.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A2.list.bz2 ... (ancestral genes) OK
Loading genome of example/results/ancGenes/all/ancGenes.A3.list.bz2 ... (ancestral genes) OK
Loading genome of example/data/genes/genes.M1.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M2.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M3.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M4.list.bz2 ... (Ensembl) OK
Loading genome of example/data/genes/genes.M5.list.bz2 ... (Ensembl) OK
Elapsed time: 5.84929895401001
Loading genome of example/results/ancBlocks/denovo-all/blocks.A0.list.bz2 ... (ancestral genome: diags) OK
Gene order comparison between A0 and M1 ... 2 [2/4/8] [5/9/14] 50 [6.17/5.22-2157] 1692 adjacencies / 1829 blocks
Gene order comparison between A0 and M2 ... 2 [2/4/8] [5/8/13] 50 [5.95/5.02-2211] 1661 adjacencies / 1825 blocks
Gene order comparison between A0 and M3 ... 2 [2/4/7] [4/8/13] 40 [5.73/4.93-2166] 1650 adjacencies / 1775 blocks
Gene order comparison between A0 and M4 ... 2 [2/4/8] [5/9/15] 45 [6.33/5.50-1851] 1649 adjacencies / 1692 blocks
Gene order comparison between A0 and M5 ... 2 [2/3/6] [3/6/9] 32 [4.65/3.48-2562] 847 adjacencies / 1767 blocks
Output blocks of A0 2 [3/9/22] [17/34/59] 146 [16.52/19.63-850] + 2229 singletons
Loading genome of example/results/ancBlocks/denovo-all/blocks.A1.list.bz2 ... (ancestral genome: diags) OK
Gene order comparison between A1 and M1 ... 2 [3/6/14] [10/19/35] 131 [10.86/13.00-1405] 795 adjacencies / 913 blocks
Gene order comparison between A1 and M2 ... 2 [2/6/13] [9/17/31] 89 [10.02/11.10-1519] 793 adjacencies / 936 blocks
Gene order comparison between A1 and M3 ... 2 [2/4/12] [10/20/38] 114 [9.88/13.22-1491] 809 adjacencies / 923 blocks
Gene order comparison between A1 and M4 ... 2 [2/5/11] [8/17/30] 86 [9.00/10.41-1342] 579 adjacencies / 735 blocks
Gene order comparison between A1 and M5 ... 2 [2/4/6] [4/7/11] 37 [5.14/4.28-2386] 303 adjacencies / 763 blocks
Output blocks of A1 2 [3/9/74] [98/160/291] 531 [54.81/90.15-294] + 1224 singletons
Loading genome of example/results/ancBlocks/denovo-all/blocks.A2.list.bz2 ... (ancestral genome: diags) OK
Gene order comparison between A2 and M1 ... 2 [2/5/9] [5/10/16] 74 [6.63/6.07-2019] 1200 adjacencies / 1436 blocks
Gene order comparison between A2 and M2 ... 2 [2/4/8] [5/9/15] 58 [6.31/5.68-2097] 1174 adjacencies / 1435 blocks
Gene order comparison between A2 and M3 ... 2 [2/4/8] [5/9/15] 40 [6.12/5.45-2042] 1176 adjacencies / 1412 blocks
Gene order comparison between A2 and M4 ... 2 [2/5/10] [7/12/21] 84 [7.77/7.57-1567] 1338 adjacencies / 1383 blocks
Gene order comparison between A2 and M5 ... 2 [2/4/7] [4/7/12] 50 [5.25/4.43-2370] 572 adjacencies / 1434 blocks
Output blocks of A2 2 [3/10/36] [36/74/117] 285 [27.84/40.71-518] + 1150 singletons
Loading genome of example/results/ancBlocks/denovo-all/blocks.A3.list.bz2 ... (ancestral genome: diags) OK
Gene order comparison between A3 and M1 ... 2 [2/6/20] [21/47/90] 263 [17.73/28.81-931] 510 adjacencies / 584 blocks
Gene order comparison between A3 and M2 ... 2 [2/5/17] [18/40/76] 198 [15.31/23.34-1078] 502 adjacencies / 610 blocks
Gene order comparison between A3 and M3 ... 2 [2/5/13] [11/23/44] 152 [10.75/14.64-1351] 391 adjacencies / 499 blocks
Gene order comparison between A3 and M4 ... 2 [2/5/12] [9/18/31] 93 [9.43/10.96-1268] 242 adjacencies / 340 blocks
Gene order comparison between A3 and M5 ... 2 [2/4/6] [4/7/11] 32 [5.10/4.22-2385] 136 adjacencies / 355 blocks
Output blocks of A3 2 [2/10/99] [147/276/414] 589 [76.57/127.58-223] + 1045 singletons
