package feature
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Type Members
- case class BEDInFormatter extends InFormatter[Feature, Feature, FeatureDataset, BEDInFormatter] with Product with Serializable
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case class
BEDOutFormatter(stringency: ValidationStringency = ValidationStringency.STRICT) extends OutFormatter[Feature] with Product with Serializable
OutFormatter that reads streaming BED format.
OutFormatter that reads streaming BED format.
- stringency
Validation stringency. Defaults to ValidationStringency.STRICT.
- abstract class CoverageDataset extends MultisampleGenomicDataset[Coverage, Coverage, CoverageDataset] with GenomicDataset[Coverage, Coverage, CoverageDataset]
- case class DatasetBoundCoverageDataset extends CoverageDataset with DatasetBoundGenomicDataset[Coverage, Coverage, CoverageDataset] with Product with Serializable
- case class DatasetBoundFeatureDataset extends FeatureDataset with DatasetBoundGenomicDataset[Feature, Feature, FeatureDataset] with Product with Serializable
- sealed abstract class FeatureDataset extends AvroGenomicDataset[Feature, Feature, FeatureDataset] with MultisampleGenomicDataset[Feature, Feature, FeatureDataset]
- case class GFF3InFormatter extends InFormatter[Feature, Feature, FeatureDataset, GFF3InFormatter] with Product with Serializable
-
case class
GFF3OutFormatter(stringency: ValidationStringency = ValidationStringency.STRICT) extends OutFormatter[Feature] with Product with Serializable
OutFormatter that reads streaming GFF3 format.
OutFormatter that reads streaming GFF3 format.
- stringency
Validation stringency. Defaults to ValidationStringency.STRICT.
- case class GTFInFormatter extends InFormatter[Feature, Feature, FeatureDataset, GTFInFormatter] with Product with Serializable
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case class
GTFOutFormatter(stringency: ValidationStringency = ValidationStringency.STRICT) extends OutFormatter[Feature] with Product with Serializable
OutFormatter that reads streaming GTF format.
OutFormatter that reads streaming GTF format.
- stringency
Validation stringency. Defaults to ValidationStringency.STRICT.
- case class NarrowPeakInFormatter extends InFormatter[Feature, Feature, FeatureDataset, NarrowPeakInFormatter] with Product with Serializable
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case class
NarrowPeakOutFormatter() extends OutFormatter[Feature] with Product with Serializable
OutFormatter that reads streaming NarrowPeak format.
- case class ParquetUnboundCoverageDataset extends CoverageDataset with Product with Serializable
- case class ParquetUnboundFeatureDataset extends FeatureDataset with Product with Serializable
- case class RDDBoundCoverageDataset extends CoverageDataset with Product with Serializable
- case class RDDBoundFeatureDataset extends FeatureDataset with Product with Serializable
Value Members
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object
BEDInFormatter extends InFormatterCompanion[Feature, Feature, FeatureDataset, BEDInFormatter] with Serializable
InFormatter companion that builds a BEDInFormatter to write features in BED format to a pipe.
- object CoverageDataset
- object FeatureDataset
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object
GFF3InFormatter extends InFormatterCompanion[Feature, Feature, FeatureDataset, GFF3InFormatter] with Serializable
InFormatter companion that builds a GFF3InFormatter to write features in GFF3 format to a pipe.
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object
GTFInFormatter extends InFormatterCompanion[Feature, Feature, FeatureDataset, GTFInFormatter] with Serializable
InFormatter companion that builds a GTFInFormatter to write features in GTF format to a pipe.
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object
NarrowPeakInFormatter extends InFormatterCompanion[Feature, Feature, FeatureDataset, NarrowPeakInFormatter] with Serializable
InFormatter companion that builds a NarrowPeakInFormatter to write features in NarrowPeak format to a pipe.