object ADAMContext extends Serializable

This singleton provides an implicit conversion from a SparkContext to the ADAMContext, as well as implicit functions for the Pipe API.

Linear Supertypes
Serializable, Serializable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. ADAMContext
  2. Serializable
  3. Serializable
  4. AnyRef
  5. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. def ADAMContextFromSession(ss: SparkSession): ADAMContext

    Creates an ADAMContext from a SparkSession.

    Creates an ADAMContext from a SparkSession.

    ss

    SparkSession

    returns

    ADAMContext

  5. implicit def AlignmentsToAlignmentsConversionFn(gDataset: AlignmentDataset, rdd: RDD[Alignment]): AlignmentDataset
  6. implicit def AlignmentsToCoverageConversionFn(gDataset: AlignmentDataset, rdd: RDD[Coverage]): CoverageDataset
  7. implicit def AlignmentsToCoverageDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Coverage]): CoverageDataset
  8. implicit def AlignmentsToFeaturesConversionFn(gDataset: AlignmentDataset, rdd: RDD[Feature]): FeatureDataset
  9. implicit def AlignmentsToFeaturesDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Feature]): FeatureDataset
  10. implicit def AlignmentsToFragmentsConversionFn(gDataset: AlignmentDataset, rdd: RDD[Fragment]): FragmentDataset
  11. implicit def AlignmentsToFragmentsDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Fragment]): FragmentDataset
  12. implicit def AlignmentsToGenotypesConversionFn(gDataset: AlignmentDataset, rdd: RDD[Genotype]): GenotypeDataset
  13. implicit def AlignmentsToGenotypesDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Genotype]): GenotypeDataset
  14. implicit def AlignmentsToReadsConversionFn(gDataset: AlignmentDataset, rdd: RDD[Read]): ReadDataset
  15. implicit def AlignmentsToReadsDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Read]): ReadDataset
  16. implicit def AlignmentsToSequencesConversionFn(gDataset: AlignmentDataset, rdd: RDD[Sequence]): SequenceDataset
  17. implicit def AlignmentsToSequencesDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Sequence]): SequenceDataset
  18. implicit def AlignmentsToSlicesConversionFn(gDataset: AlignmentDataset, rdd: RDD[Slice]): SliceDataset
  19. implicit def AlignmentsToSlicesDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Slice]): SliceDataset
  20. implicit def AlignmentsToVariantContextConversionFn(gDataset: AlignmentDataset, rdd: RDD[VariantContext]): VariantContextDataset
  21. implicit def AlignmentsToVariantsConversionFn(gDataset: AlignmentDataset, rdd: RDD[Variant]): VariantDataset
  22. implicit def AlignmentsToVariantsDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Variant]): VariantDataset
  23. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  24. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  25. implicit def coverageToAlignmentsConversionFn(gDataset: CoverageDataset, rdd: RDD[Alignment]): AlignmentDataset
  26. implicit def coverageToAlignmentsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Alignment]): AlignmentDataset
  27. implicit def coverageToCoverageConversionFn(gDataset: CoverageDataset, rdd: RDD[Coverage]): CoverageDataset
  28. implicit def coverageToFeaturesConversionFn(gDataset: CoverageDataset, rdd: RDD[Feature]): FeatureDataset
  29. implicit def coverageToFeaturesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Feature]): FeatureDataset
  30. implicit def coverageToFragmentsConversionFn(gDataset: CoverageDataset, rdd: RDD[Fragment]): FragmentDataset
  31. implicit def coverageToFragmentsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Fragment]): FragmentDataset
  32. implicit def coverageToGenotypesConversionFn(gDataset: CoverageDataset, rdd: RDD[Genotype]): GenotypeDataset
  33. implicit def coverageToGenotypesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Genotype]): GenotypeDataset
  34. implicit def coverageToReadsConversionFn(gDataset: CoverageDataset, rdd: RDD[Read]): ReadDataset
  35. implicit def coverageToReadsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Read]): ReadDataset
  36. implicit def coverageToSequencesConversionFn(gDataset: CoverageDataset, rdd: RDD[Sequence]): SequenceDataset
  37. implicit def coverageToSequencesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Sequence]): SequenceDataset
  38. implicit def coverageToSlicesConversionFn(gDataset: CoverageDataset, rdd: RDD[Slice]): SliceDataset
  39. implicit def coverageToSlicesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Slice]): SliceDataset
  40. implicit def coverageToVariantContextConversionFn(gDataset: CoverageDataset, rdd: RDD[VariantContext]): VariantContextDataset
  41. implicit def coverageToVariantsConversionFn(gDataset: CoverageDataset, rdd: RDD[Variant]): VariantDataset
  42. implicit def coverageToVariantsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Variant]): VariantDataset
  43. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  44. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  45. implicit def featuresToAlignmentsConversionFn(gDataset: FeatureDataset, rdd: RDD[Alignment]): AlignmentDataset
  46. implicit def featuresToAlignmentsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Alignment]): AlignmentDataset
  47. implicit def featuresToCoverageConversionFn(gDataset: FeatureDataset, rdd: RDD[Coverage]): CoverageDataset
  48. implicit def featuresToCoverageDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Coverage]): CoverageDataset
  49. implicit def featuresToFeaturesConversionFn(gDataset: FeatureDataset, rdd: RDD[Feature]): FeatureDataset
  50. implicit def featuresToFragmentsConversionFn(gDataset: FeatureDataset, rdd: RDD[Fragment]): FragmentDataset
  51. implicit def featuresToFragmentsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Fragment]): FragmentDataset
  52. implicit def featuresToGenotypesConversionFn(gDataset: FeatureDataset, rdd: RDD[Genotype]): GenotypeDataset
  53. implicit def featuresToGenotypesDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Genotype]): GenotypeDataset
  54. implicit def featuresToReadsConversionFn(gDataset: FeatureDataset, rdd: RDD[Read]): ReadDataset
  55. implicit def featuresToReadsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Read]): ReadDataset
  56. implicit def featuresToSequencesConversionFn(gDataset: FeatureDataset, rdd: RDD[Sequence]): SequenceDataset
  57. implicit def featuresToSequencesDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Sequence]): SequenceDataset
  58. implicit def featuresToSlicesConversionFn(gDataset: FeatureDataset, rdd: RDD[Slice]): SliceDataset
  59. implicit def featuresToSlicesDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Slice]): SliceDataset
  60. implicit def featuresToVariantContextConversionFn(gDataset: FeatureDataset, rdd: RDD[VariantContext]): VariantContextDataset
  61. implicit def featuresToVariantsConversionFn(gDataset: FeatureDataset, rdd: RDD[Variant]): VariantDataset
  62. implicit def featuresToVariantsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Variant]): VariantDataset
  63. implicit def fragmentsToAlignmentsConversionFn(gDataset: FragmentDataset, rdd: RDD[Alignment]): AlignmentDataset
  64. implicit def fragmentsToAlignmentsDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Alignment]): AlignmentDataset
  65. implicit def fragmentsToCoverageConversionFn(gDataset: FragmentDataset, rdd: RDD[Coverage]): CoverageDataset
  66. implicit def fragmentsToCoverageDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Coverage]): CoverageDataset
  67. implicit def fragmentsToFeaturesConversionFn(gDataset: FragmentDataset, rdd: RDD[Feature]): FeatureDataset
  68. implicit def fragmentsToFeaturesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Feature]): FeatureDataset
  69. implicit def fragmentsToFragmentsConversionFn(gDataset: FragmentDataset, rdd: RDD[Fragment]): FragmentDataset
  70. implicit def fragmentsToGenotypesConversionFn(gDataset: FragmentDataset, rdd: RDD[Genotype]): GenotypeDataset
  71. implicit def fragmentsToGenotypesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Genotype]): GenotypeDataset
  72. implicit def fragmentsToReadsConversionFn(gDataset: FragmentDataset, rdd: RDD[Read]): ReadDataset
  73. implicit def fragmentsToReadsDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Read]): ReadDataset
  74. implicit def fragmentsToSequencesConversionFn(gDataset: FragmentDataset, rdd: RDD[Sequence]): SequenceDataset
  75. implicit def fragmentsToSequencesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Sequence]): SequenceDataset
  76. implicit def fragmentsToSlicesConversionFn(gDataset: FragmentDataset, rdd: RDD[Slice]): SliceDataset
  77. implicit def fragmentsToSlicesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Slice]): SliceDataset
  78. implicit def fragmentsToVariantContextConversionFn(gDataset: FragmentDataset, rdd: RDD[VariantContext]): VariantContextDataset
  79. implicit def fragmentsToVariantsConversionFn(gDataset: FragmentDataset, rdd: RDD[Variant]): VariantDataset
  80. implicit def fragmentsToVariantsDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Variant]): VariantDataset
  81. implicit def genericToAlignmentsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Alignment]): AlignmentDataset
  82. implicit def genericToCoverageConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Coverage]): CoverageDataset
  83. implicit def genericToFeatureConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Feature]): FeatureDataset
  84. implicit def genericToFragmentsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Fragment]): FragmentDataset
  85. implicit def genericToGenotypesConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Genotype]): GenotypeDataset
  86. implicit def genericToReadsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Read]): ReadDataset
  87. implicit def genericToSequencesConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Sequence]): SequenceDataset
  88. implicit def genericToSlicesConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Slice]): SliceDataset
  89. implicit def genericToVariantContextsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[VariantContext]): VariantContextDataset
  90. implicit def genericToVariantsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Variant]): VariantDataset
  91. implicit def genotypesToAlignmentsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Alignment]): AlignmentDataset
  92. implicit def genotypesToAlignmentsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Alignment]): AlignmentDataset
  93. implicit def genotypesToCoverageConversionFn(gDataset: GenotypeDataset, rdd: RDD[Coverage]): CoverageDataset
  94. implicit def genotypesToCoverageDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Coverage]): CoverageDataset
  95. implicit def genotypesToFeaturesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Feature]): FeatureDataset
  96. implicit def genotypesToFeaturesDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Feature]): FeatureDataset
  97. implicit def genotypesToFragmentsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Fragment]): FragmentDataset
  98. implicit def genotypesToFragmentsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Fragment]): FragmentDataset
  99. implicit def genotypesToGenotypesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Genotype]): GenotypeDataset
  100. implicit def genotypesToReadsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Read]): ReadDataset
  101. implicit def genotypesToReadsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Read]): ReadDataset
  102. implicit def genotypesToSequencesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Sequence]): SequenceDataset
  103. implicit def genotypesToSequencesDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Sequence]): SequenceDataset
  104. implicit def genotypesToSlicesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Slice]): SliceDataset
  105. implicit def genotypesToSlicesDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Slice]): SliceDataset
  106. implicit def genotypesToVariantContextConversionFn(gDataset: GenotypeDataset, rdd: RDD[VariantContext]): VariantContextDataset
  107. implicit def genotypesToVariantsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Variant]): VariantDataset
  108. implicit def genotypesToVariantsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Variant]): VariantDataset
  109. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  110. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  111. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  112. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  113. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  114. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  115. implicit def readsToAlignmentsConversionFn(gDataset: ReadDataset, rdd: RDD[Alignment]): AlignmentDataset
  116. implicit def readsToAlignmentsDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Alignment]): AlignmentDataset
  117. implicit def readsToCoverageConversionFn(gDataset: ReadDataset, rdd: RDD[Coverage]): CoverageDataset
  118. implicit def readsToCoverageDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Coverage]): CoverageDataset
  119. implicit def readsToFeaturesConversionFn(gDataset: ReadDataset, rdd: RDD[Feature]): FeatureDataset
  120. implicit def readsToFeaturesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Feature]): FeatureDataset
  121. implicit def readsToFragmentsConversionFn(gDataset: ReadDataset, rdd: RDD[Fragment]): FragmentDataset
  122. implicit def readsToFragmentsDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Fragment]): FragmentDataset
  123. implicit def readsToGenotypesConversionFn(gDataset: ReadDataset, rdd: RDD[Genotype]): GenotypeDataset
  124. implicit def readsToGenotypesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Genotype]): GenotypeDataset
  125. implicit def readsToReadsConversionFn(gDataset: ReadDataset, rdd: RDD[Read]): ReadDataset
  126. implicit def readsToSequencesConversionFn(gDataset: ReadDataset, rdd: RDD[Sequence]): SequenceDataset
  127. implicit def readsToSequencesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Sequence]): SequenceDataset
  128. implicit def readsToSlicesConversionFn(gDataset: ReadDataset, rdd: RDD[Slice]): SliceDataset
  129. implicit def readsToSlicesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Slice]): SliceDataset
  130. implicit def readsToVariantContextsConversionFn(gDataset: ReadDataset, rdd: RDD[VariantContext]): VariantContextDataset
  131. implicit def readsToVariantsConversionFn(gDataset: ReadDataset, rdd: RDD[Variant]): VariantDataset
  132. implicit def readsToVariantsDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Variant]): VariantDataset
  133. implicit def recordToRichRecord(record: Alignment): RichAlignment
  134. implicit def sequencesToAlignmentsConversionFn(gDataset: SequenceDataset, rdd: RDD[Alignment]): AlignmentDataset
  135. implicit def sequencesToAlignmentsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Alignment]): AlignmentDataset
  136. implicit def sequencesToCoverageConversionFn(gDataset: SequenceDataset, rdd: RDD[Coverage]): CoverageDataset
  137. implicit def sequencesToCoverageDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Coverage]): CoverageDataset
  138. implicit def sequencesToFeaturesConversionFn(gDataset: SequenceDataset, rdd: RDD[Feature]): FeatureDataset
  139. implicit def sequencesToFeaturesDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Feature]): FeatureDataset
  140. implicit def sequencesToFragmentsConversionFn(gDataset: SequenceDataset, rdd: RDD[Fragment]): FragmentDataset
  141. implicit def sequencesToFragmentsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Fragment]): FragmentDataset
  142. implicit def sequencesToGenotypesConversionFn(gDataset: SequenceDataset, rdd: RDD[Genotype]): GenotypeDataset
  143. implicit def sequencesToGenotypesDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Genotype]): GenotypeDataset
  144. implicit def sequencesToReadsConversionFn(gDataset: SequenceDataset, rdd: RDD[Read]): ReadDataset
  145. implicit def sequencesToReadsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Read]): ReadDataset
  146. implicit def sequencesToSequencesConversionFn(gDataset: SequenceDataset, rdd: RDD[Sequence]): SequenceDataset
  147. implicit def sequencesToSlicesConversionFn(gDataset: SequenceDataset, rdd: RDD[Slice]): SliceDataset
  148. implicit def sequencesToSlicesDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Slice]): SliceDataset
  149. implicit def sequencesToVariantContextsConversionFn(gDataset: SequenceDataset, rdd: RDD[VariantContext]): VariantContextDataset
  150. implicit def sequencesToVariantsConversionFn(gDataset: SequenceDataset, rdd: RDD[Variant]): VariantDataset
  151. implicit def sequencesToVariantsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Variant]): VariantDataset
  152. implicit def slicesToAlignmentsConversionFn(gDataset: SliceDataset, rdd: RDD[Alignment]): AlignmentDataset
  153. implicit def slicesToAlignmentsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Alignment]): AlignmentDataset
  154. implicit def slicesToCoverageConversionFn(gDataset: SliceDataset, rdd: RDD[Coverage]): CoverageDataset
  155. implicit def slicesToCoverageDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Coverage]): CoverageDataset
  156. implicit def slicesToFeaturesConversionFn(gDataset: SliceDataset, rdd: RDD[Feature]): FeatureDataset
  157. implicit def slicesToFeaturesDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Feature]): FeatureDataset
  158. implicit def slicesToFragmentsConversionFn(gDataset: SliceDataset, rdd: RDD[Fragment]): FragmentDataset
  159. implicit def slicesToFragmentsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Fragment]): FragmentDataset
  160. implicit def slicesToGenotypesConversionFn(gDataset: SliceDataset, rdd: RDD[Genotype]): GenotypeDataset
  161. implicit def slicesToGenotypesDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Genotype]): GenotypeDataset
  162. implicit def slicesToReadsConversionFn(gDataset: SliceDataset, rdd: RDD[Read]): ReadDataset
  163. implicit def slicesToReadsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Read]): ReadDataset
  164. implicit def slicesToSequencesConversionFn(gDataset: SliceDataset, rdd: RDD[Sequence]): SequenceDataset
  165. implicit def slicesToSequencesDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Sequence]): SequenceDataset
  166. implicit def slicesToSlicesConversionFn(gDataset: SliceDataset, rdd: RDD[Slice]): SliceDataset
  167. implicit def slicesToVariantContextsConversionFn(gDataset: SliceDataset, rdd: RDD[VariantContext]): VariantContextDataset
  168. implicit def slicesToVariantsConversionFn(gDataset: SliceDataset, rdd: RDD[Variant]): VariantDataset
  169. implicit def slicesToVariantsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Variant]): VariantDataset
  170. implicit def sparkContextToADAMContext(sc: SparkContext): ADAMContext
  171. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  172. def toString(): String
    Definition Classes
    AnyRef → Any
  173. implicit def variantContextsToAlignmentsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Alignment]): AlignmentDataset
  174. implicit def variantContextsToCoverageConversionFn(gDataset: VariantContextDataset, rdd: RDD[Coverage]): CoverageDataset
  175. implicit def variantContextsToFeaturesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Feature]): FeatureDataset
  176. implicit def variantContextsToFragmentsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Fragment]): FragmentDataset
  177. implicit def variantContextsToGenotypesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Genotype]): GenotypeDataset
  178. implicit def variantContextsToReadsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Read]): ReadDataset
  179. implicit def variantContextsToSequencesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Sequence]): SequenceDataset
  180. implicit def variantContextsToSlicesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Slice]): SliceDataset
  181. implicit def variantContextsToVariantContextsConversionFn(gDataset: VariantContextDataset, rdd: RDD[VariantContext]): VariantContextDataset
  182. implicit def variantContextsToVariantsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Variant]): VariantDataset
  183. implicit def variantsToAlignmentsConversionFn(gDataset: VariantDataset, rdd: RDD[Alignment]): AlignmentDataset
  184. implicit def variantsToAlignmentsDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Alignment]): AlignmentDataset
  185. implicit def variantsToCoverageConversionFn(gDataset: VariantDataset, rdd: RDD[Coverage]): CoverageDataset
  186. implicit def variantsToCoverageDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Coverage]): CoverageDataset
  187. implicit def variantsToFeaturesConversionFn(gDataset: VariantDataset, rdd: RDD[Feature]): FeatureDataset
  188. implicit def variantsToFeaturesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Feature]): FeatureDataset
  189. implicit def variantsToFragmentsConversionFn(gDataset: VariantDataset, rdd: RDD[Fragment]): FragmentDataset
  190. implicit def variantsToFragmentsDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Fragment]): FragmentDataset
  191. implicit def variantsToGenotypesConversionFn(gDataset: VariantDataset, rdd: RDD[Genotype]): GenotypeDataset
  192. implicit def variantsToGenotypesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Genotype]): GenotypeDataset
  193. implicit def variantsToReadsConversionFn(gDataset: VariantDataset, rdd: RDD[Read]): ReadDataset
  194. implicit def variantsToReadsDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Read]): ReadDataset
  195. implicit def variantsToSequencesConversionFn(gDataset: VariantDataset, rdd: RDD[Sequence]): SequenceDataset
  196. implicit def variantsToSequencesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Sequence]): SequenceDataset
  197. implicit def variantsToSlicesConversionFn(gDataset: VariantDataset, rdd: RDD[Slice]): SliceDataset
  198. implicit def variantsToSlicesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Slice]): SliceDataset
  199. implicit def variantsToVariantContextConversionFn(gDataset: VariantDataset, rdd: RDD[VariantContext]): VariantContextDataset
  200. implicit def variantsToVariantsConversionFn(gDataset: VariantDataset, rdd: RDD[Variant]): VariantDataset
  201. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  202. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  203. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped