c

org.bdgenomics.adam.ds

ReferencePartitioner

case class ReferencePartitioner(sd: SequenceDictionary) extends Partitioner with Product with Serializable

Repartitions objects that are keyed by a ReferencePosition or ReferenceRegion into a single partition per contig.

Linear Supertypes
Product, Equals, Partitioner, Serializable, Serializable, AnyRef, Any
Ordering
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  2. By Inheritance
Inherited
  1. ReferencePartitioner
  2. Product
  3. Equals
  4. Partitioner
  5. Serializable
  6. Serializable
  7. AnyRef
  8. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new ReferencePartitioner(sd: SequenceDictionary)

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  6. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  7. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  8. def getPartition(key: Any): Int
    Definition Classes
    ReferencePartitioner → Partitioner
  9. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  10. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  11. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  12. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  13. def numPartitions: Int
    Definition Classes
    ReferencePartitioner → Partitioner
  14. val sd: SequenceDictionary
  15. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  16. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  17. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  18. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from Product

Inherited from Equals

Inherited from Partitioner

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped