case class TranscriptEffect(alternateAllele: Option[String] = None, effects: Seq[String] = Seq(), impact: Option[String] = None, geneName: Option[String] = None, geneId: Option[String] = None, featureType: Option[String] = None, featureId: Option[String] = None, biotype: Option[String] = None, strand: Option[String] = None, rank: Option[Int] = None, total: Option[Int] = None, genomicHgvs: Option[String] = None, transcriptHgvs: Option[String] = None, proteinHgvs: Option[String] = None, cdnaPosition: Option[Int] = None, cdnaLength: Option[Int] = None, codingSequencePosition: Option[Int] = None, codingSequenceLength: Option[Int] = None, referenceCodingSequence: Option[String] = None, alternateCodingSequence: Option[String] = None, proteinPosition: Option[Int] = None, proteinLength: Option[Int] = None, referenceProteinSequence: Option[String] = None, alternateProteinSequence: Option[String] = None, distance: Option[Int] = None, messages: Seq[String] = Seq()) extends Product with Serializable
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Instance Constructors
- new TranscriptEffect(alternateAllele: Option[String] = None, effects: Seq[String] = Seq(), impact: Option[String] = None, geneName: Option[String] = None, geneId: Option[String] = None, featureType: Option[String] = None, featureId: Option[String] = None, biotype: Option[String] = None, strand: Option[String] = None, rank: Option[Int] = None, total: Option[Int] = None, genomicHgvs: Option[String] = None, transcriptHgvs: Option[String] = None, proteinHgvs: Option[String] = None, cdnaPosition: Option[Int] = None, cdnaLength: Option[Int] = None, codingSequencePosition: Option[Int] = None, codingSequenceLength: Option[Int] = None, referenceCodingSequence: Option[String] = None, alternateCodingSequence: Option[String] = None, proteinPosition: Option[Int] = None, proteinLength: Option[Int] = None, referenceProteinSequence: Option[String] = None, alternateProteinSequence: Option[String] = None, distance: Option[Int] = None, messages: Seq[String] = Seq())
Value Members
-
final
def
!=(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
-
final
def
##(): Int
- Definition Classes
- AnyRef → Any
-
final
def
==(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
- val alternateAllele: Option[String]
- val alternateCodingSequence: Option[String]
- val alternateProteinSequence: Option[String]
-
final
def
asInstanceOf[T0]: T0
- Definition Classes
- Any
- val biotype: Option[String]
-
def
canEqual(that: Any): Boolean
- Definition Classes
- TranscriptEffect → Equals
- val cdnaLength: Option[Int]
- val cdnaPosition: Option[Int]
-
def
clone(): AnyRef
- Attributes
- protected[lang]
- Definition Classes
- AnyRef
- Annotations
- @throws( ... ) @native() @HotSpotIntrinsicCandidate()
- val codingSequenceLength: Option[Int]
- val codingSequencePosition: Option[Int]
- val distance: Option[Int]
- val effects: Seq[String]
-
final
def
eq(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
- val featureId: Option[String]
- val featureType: Option[String]
- val geneId: Option[String]
- val geneName: Option[String]
- val genomicHgvs: Option[String]
-
final
def
getClass(): Class[_]
- Definition Classes
- AnyRef → Any
- Annotations
- @native() @HotSpotIntrinsicCandidate()
- val impact: Option[String]
-
final
def
isInstanceOf[T0]: Boolean
- Definition Classes
- Any
- val messages: Seq[String]
-
final
def
ne(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
-
final
def
notify(): Unit
- Definition Classes
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- @native() @HotSpotIntrinsicCandidate()
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final
def
notifyAll(): Unit
- Definition Classes
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- Annotations
- @native() @HotSpotIntrinsicCandidate()
-
def
productArity: Int
- Definition Classes
- TranscriptEffect → Product
-
def
productElement(i: Int): Any
- Definition Classes
- TranscriptEffect → Product
- val proteinHgvs: Option[String]
- val proteinLength: Option[Int]
- val proteinPosition: Option[Int]
- val rank: Option[Int]
- val referenceCodingSequence: Option[String]
- val referenceProteinSequence: Option[String]
- val strand: Option[String]
-
final
def
synchronized[T0](arg0: ⇒ T0): T0
- Definition Classes
- AnyRef
- def toAvro: formats.avro.TranscriptEffect
- val total: Option[Int]
- val transcriptHgvs: Option[String]
-
final
def
wait(arg0: Long, arg1: Int): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
final
def
wait(arg0: Long): Unit
- Definition Classes
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- Annotations
- @throws( ... ) @native()
-
final
def
wait(): Unit
- Definition Classes
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- Annotations
- @throws( ... )
Deprecated Value Members
-
def
finalize(): Unit
- Attributes
- protected[lang]
- Definition Classes
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- @throws( classOf[java.lang.Throwable] ) @Deprecated
- Deprecated