object VariantContextDataset extends Serializable

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  4. def apply(ds: Dataset[VariantContext], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): VariantContextDataset

    Builds a VariantContextDataset from a Dataset.

    Builds a VariantContextDataset from a Dataset.

    ds

    The underlying VariantContext dataset.

    sequences

    The sequence dictionary for the genomic dataset.

    samples

    The samples for the genomic dataset.

    headerLines

    The header lines for the genomic dataset.

    returns

    A new VariantContextDataset.

  5. def apply(ds: Dataset[VariantContext], references: Iterable[Reference], samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): VariantContextDataset

    Builds a VariantContextDataset from a Dataset.

    Builds a VariantContextDataset from a Dataset.

    ds

    The underlying VariantContext dataset.

    references

    The references for the genomic dataset.

    samples

    The samples for the genomic dataset.

    headerLines

    The header lines for the genomic dataset.

    returns

    A new VariantContextDataset.

  6. def apply(ds: Dataset[VariantContext]): VariantContextDataset

    Builds a VariantContextDataset from a Dataset.

    Builds a VariantContextDataset from a Dataset.

    ds

    The underlying VariantContext dataset.

    returns

    A new VariantContextDataset.

  7. def apply(rdd: RDD[VariantContext], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): VariantContextDataset

    Builds a VariantContextDataset from an RDD.

    Builds a VariantContextDataset from an RDD.

    rdd

    The underlying VariantContext RDD.

    sequences

    The sequence dictionary for the genomic dataset.

    samples

    The samples for the genomic dataset.

    headerLines

    The header lines for the genomic dataset.

    returns

    A new VariantContextDataset.

  8. def apply(rdd: RDD[VariantContext], references: Iterable[Reference], samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): VariantContextDataset

    Builds a VariantContextDataset from an RDD.

    Builds a VariantContextDataset from an RDD.

    rdd

    The underlying VariantContext RDD.

    references

    The references for the genomic dataset.

    samples

    The samples for the genomic dataset.

    headerLines

    The header lines for the genomic dataset.

    returns

    A new VariantContextDataset.

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