object AlignmentField extends FieldEnumeration

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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Inherited
  1. AlignmentField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Visibility
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Type Members

  1. class Val extends Value with Serializable
    Attributes
    protected
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID()
  2. abstract class Value extends Ordered[Value] with Serializable
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID()
  3. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable
    Definition Classes
    Enumeration
  4. class SchemaVal extends Val with FieldValue

    An enumerated field that is part of this schema.

    An enumerated field that is part of this schema.

    Definition Classes
    FieldEnumeration

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def SchemaValue: SchemaVal
    Attributes
    protected
    Definition Classes
    FieldEnumeration
  5. final def Value(i: Int, name: String): Value
    Attributes
    protected
    Definition Classes
    Enumeration
  6. final def Value(name: String): Value
    Attributes
    protected
    Definition Classes
    Enumeration
  7. final def Value(i: Int): Value
    Attributes
    protected
    Definition Classes
    Enumeration
  8. final def Value: Value
    Attributes
    protected
    Definition Classes
    Enumeration
  9. final def apply(x: Int): Value
    Definition Classes
    Enumeration
  10. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  11. val attributes: SchemaVal
  12. val basesTrimmedFromEnd: SchemaVal
  13. val basesTrimmedFromStart: SchemaVal
  14. val cigar: SchemaVal
  15. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  16. val duplicateRead: SchemaVal
  17. val end: SchemaVal
  18. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  19. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  20. val failedVendorQualityChecks: SchemaVal
  21. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  22. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  23. val insertSize: SchemaVal
  24. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  25. val mappingQuality: SchemaVal
  26. val mateAlignmentStart: SchemaVal
  27. val mateMapped: SchemaVal
  28. val mateNegativeStrand: SchemaVal
  29. val mateReferenceName: SchemaVal
  30. final def maxId: Int
    Definition Classes
    Enumeration
  31. val mismatchingPositions: SchemaVal
  32. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  33. var nextId: Int
    Attributes
    protected
    Definition Classes
    Enumeration
  34. var nextName: Iterator[String]
    Attributes
    protected
    Definition Classes
    Enumeration
  35. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  36. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  37. val originalCigar: SchemaVal
  38. val originalQualityScores: SchemaVal
  39. val originalStart: SchemaVal
  40. val primaryAlignment: SchemaVal
  41. val properPair: SchemaVal
  42. val qualityScores: SchemaVal
  43. val readGroupId: SchemaVal
  44. val readGroupSampleId: SchemaVal
  45. val readInFragment: SchemaVal
  46. val readMapped: SchemaVal
  47. val readName: SchemaVal
  48. val readNegativeStrand: SchemaVal
  49. val readPaired: SchemaVal
  50. def readResolve(): AnyRef
    Attributes
    protected
    Definition Classes
    Enumeration
  51. val recordSchema: Schema
    Definition Classes
    FieldEnumeration
  52. val referenceName: SchemaVal
  53. val secondaryAlignment: SchemaVal
  54. val sequence: SchemaVal
  55. val start: SchemaVal
  56. val supplementaryAlignment: SchemaVal
  57. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  58. def toString(): String
    Definition Classes
    Enumeration → AnyRef → Any
  59. def values: ValueSet
    Definition Classes
    Enumeration
  60. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  61. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  62. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  63. final def withName(s: String): Value
    Definition Classes
    Enumeration

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated
    Deprecated

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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