object SequenceDataset
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val
FASTA_LINE_WIDTH: String
Hadoop configuration path to specify line width at which to hard wrap FASTA formatted sequences.
Hadoop configuration path to specify line width at which to hard wrap FASTA formatted sequences. Defaults to 60.
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def
apply(rdd: RDD[Sequence], references: SequenceDictionary, samples: Iterable[Sample]): SequenceDataset
A genomic dataset that wraps an RDD of Sequence data.
A genomic dataset that wraps an RDD of Sequence data.
- rdd
The underlying Sequence RDD to build from.
- references
The reference genome these data are aligned to.
- samples
Samples for these sequences.
- returns
Returns a new SequenceDataset.
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def
apply(rdd: RDD[Sequence]): SequenceDataset
A genomic dataset that wraps an RDD of Sequence data.
A genomic dataset that wraps an RDD of Sequence data.
- rdd
The underlying Sequence RDD to build from.
- returns
Returns a new SequenceDataset.
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def
apply(ds: Dataset[Sequence], references: SequenceDictionary, samples: Iterable[Sample]): SequenceDataset
A genomic dataset that wraps a dataset of Sequence data.
A genomic dataset that wraps a dataset of Sequence data.
- ds
A Dataset of sequences.
- references
The reference genome these data are aligned to.
- samples
Samples for these sequences.
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def
apply(ds: Dataset[Sequence]): SequenceDataset
A genomic dataset that wraps a dataset of Sequence data.
A genomic dataset that wraps a dataset of Sequence data.
- ds
A Dataset of sequences.
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