object ReadGroup extends Serializable

Singleton object for creating ReaGroups.

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  1. final def !=(arg0: Any): Boolean
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  2. final def ##(): Int
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  3. final def ==(arg0: Any): Boolean
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  4. def apply(samRGR: SAMReadGroupRecord): ReadGroup

    Converts a SAMReadGroupRecord into a ReadGroup.

    Converts a SAMReadGroupRecord into a ReadGroup.

    samRGR

    SAMReadGroupRecord to convert.

    returns

    Returns an equivalent ADAM format read group.

  5. final def asInstanceOf[T0]: T0
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  6. def clone(): AnyRef
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  7. final def eq(arg0: AnyRef): Boolean
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  8. def equals(arg0: Any): Boolean
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  9. def fromAvro(readGroups: Seq[formats.avro.ReadGroup]): ReadGroupDictionary
  10. def fromAvro(readGroup: formats.avro.ReadGroup): ReadGroup

    Converts the Avro ReadGroup record into a model ReadGroup.

    Converts the Avro ReadGroup record into a model ReadGroup.

    Although the ReadGroup class is serializable, when saving the record to disk, we want to save it as Avro. This method allows us to go from the Avro format which we use on disk into the class we use in memory.

    readGroup

    ReadGroup record loaded from disk.

    returns

    Avro record converted into ReadGroup representation.

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  12. def hashCode(): Int
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  13. final def isInstanceOf[T0]: Boolean
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  17. final def synchronized[T0](arg0: ⇒ T0): T0
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