object VariantDataset extends Serializable
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def
apply(ds: Dataset[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine]): VariantDataset
Builds a VariantDataset from a Dataset.
Builds a VariantDataset from a Dataset.
- ds
The underlying Variant Dataset.
- sequences
The sequence dictionary for the genomic dataset.
- headerLines
The header lines for the genomic dataset.
- returns
A new VariantDataset.
-
def
apply(ds: Dataset[Variant], references: Iterable[Reference], headerLines: Seq[VCFHeaderLine]): VariantDataset
Builds a VariantDataset from a Dataset.
Builds a VariantDataset from a Dataset.
- ds
The underlying Variant Dataset.
- references
The references for the genomic dataset.
- headerLines
The header lines for the genomic dataset.
- returns
A new VariantDataset.
-
def
apply(ds: Dataset[Variant]): VariantDataset
Builds a VariantDataset from a Dataset.
Builds a VariantDataset from a Dataset.
- ds
The underlying Variant Dataset.
- returns
A new VariantDataset.
-
def
apply(rdd: RDD[Variant], sequences: SequenceDictionary, headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): VariantDataset
Builds a VariantDataset from an RDD.
Builds a VariantDataset from an RDD.
- rdd
The underlying Variant RDD.
- sequences
The sequence dictionary for the genomic dataset.
- headerLines
The header lines for the genomic dataset.
- returns
A new VariantDataset.
-
def
apply(rdd: RDD[Variant], references: Iterable[Reference], headerLines: Seq[VCFHeaderLine]): VariantDataset
Builds a VariantDataset from an RDD.
Builds a VariantDataset from an RDD.
- rdd
The underlying Variant RDD.
- references
The references for the genomic dataset.
- headerLines
The header lines for the genomic dataset.
- returns
A new VariantDataset.
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