case class Genotype(variant: Option[Variant] = None, referenceName: Option[String] = None, start: Option[Long] = None, end: Option[Long] = None, variantCallingAnnotations: Option[VariantCallingAnnotations] = None, sampleId: Option[String] = None, sampleDescription: Option[String] = None, processingDescription: Option[String] = None, alleles: Seq[String] = Seq(), expectedAlleleDosage: Option[Float] = None, referenceReadDepth: Option[Int] = None, alternateReadDepth: Option[Int] = None, readDepth: Option[Int] = None, minReadDepth: Option[Int] = None, genotypeQuality: Option[Int] = None, genotypeLikelihoods: Seq[Double] = Seq(), nonReferenceLikelihoods: Seq[Double] = Seq(), strandBiasComponents: Seq[Int] = Seq(), splitFromMultiAllelic: Option[Boolean] = None, phased: Option[Boolean] = None, phaseSetId: Option[Int] = None, phaseQuality: Option[Int] = None) extends Product with Serializable
Linear Supertypes
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Inherited
- Genotype
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Visibility
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Instance Constructors
- new Genotype(variant: Option[Variant] = None, referenceName: Option[String] = None, start: Option[Long] = None, end: Option[Long] = None, variantCallingAnnotations: Option[VariantCallingAnnotations] = None, sampleId: Option[String] = None, sampleDescription: Option[String] = None, processingDescription: Option[String] = None, alleles: Seq[String] = Seq(), expectedAlleleDosage: Option[Float] = None, referenceReadDepth: Option[Int] = None, alternateReadDepth: Option[Int] = None, readDepth: Option[Int] = None, minReadDepth: Option[Int] = None, genotypeQuality: Option[Int] = None, genotypeLikelihoods: Seq[Double] = Seq(), nonReferenceLikelihoods: Seq[Double] = Seq(), strandBiasComponents: Seq[Int] = Seq(), splitFromMultiAllelic: Option[Boolean] = None, phased: Option[Boolean] = None, phaseSetId: Option[Int] = None, phaseQuality: Option[Int] = None)
Value Members
-
final
def
!=(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
-
final
def
##(): Int
- Definition Classes
- AnyRef → Any
-
final
def
==(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
- val alleles: Seq[String]
- val alternateReadDepth: Option[Int]
-
final
def
asInstanceOf[T0]: T0
- Definition Classes
- Any
-
def
canEqual(that: Any): Boolean
- Definition Classes
- Genotype → Equals
-
def
clone(): AnyRef
- Attributes
- protected[lang]
- Definition Classes
- AnyRef
- Annotations
- @throws( ... ) @native() @HotSpotIntrinsicCandidate()
- val end: Option[Long]
-
final
def
eq(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
- val expectedAlleleDosage: Option[Float]
- val genotypeLikelihoods: Seq[Double]
- val genotypeQuality: Option[Int]
-
final
def
getClass(): Class[_]
- Definition Classes
- AnyRef → Any
- Annotations
- @native() @HotSpotIntrinsicCandidate()
-
final
def
isInstanceOf[T0]: Boolean
- Definition Classes
- Any
- val minReadDepth: Option[Int]
-
final
def
ne(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
- val nonReferenceLikelihoods: Seq[Double]
-
final
def
notify(): Unit
- Definition Classes
- AnyRef
- Annotations
- @native() @HotSpotIntrinsicCandidate()
-
final
def
notifyAll(): Unit
- Definition Classes
- AnyRef
- Annotations
- @native() @HotSpotIntrinsicCandidate()
- val phaseQuality: Option[Int]
- val phaseSetId: Option[Int]
- val phased: Option[Boolean]
- val processingDescription: Option[String]
-
def
productArity: Int
- Definition Classes
- Genotype → Product
-
def
productElement(i: Int): Any
- Definition Classes
- Genotype → Product
- val readDepth: Option[Int]
- val referenceName: Option[String]
- val referenceReadDepth: Option[Int]
- val sampleDescription: Option[String]
- val sampleId: Option[String]
- val splitFromMultiAllelic: Option[Boolean]
- val start: Option[Long]
- val strandBiasComponents: Seq[Int]
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final
def
synchronized[T0](arg0: ⇒ T0): T0
- Definition Classes
- AnyRef
- def toAvro: formats.avro.Genotype
- val variant: Option[Variant]
- val variantCallingAnnotations: Option[VariantCallingAnnotations]
-
final
def
wait(arg0: Long, arg1: Int): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
-
final
def
wait(arg0: Long): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... ) @native()
-
final
def
wait(): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... )
Deprecated Value Members
-
def
finalize(): Unit
- Attributes
- protected[lang]
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- @throws( classOf[java.lang.Throwable] ) @Deprecated
- Deprecated