object ADAMContext extends Serializable
This singleton provides an implicit conversion from a SparkContext to the ADAMContext, as well as implicit functions for the Pipe API.
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def
ADAMContextFromSession(ss: SparkSession): ADAMContext
Creates an ADAMContext from a SparkSession.
Creates an ADAMContext from a SparkSession.
- ss
SparkSession
- returns
ADAMContext
- implicit def AlignmentsToAlignmentsConversionFn(gDataset: AlignmentDataset, rdd: RDD[Alignment]): AlignmentDataset
- implicit def AlignmentsToCoverageConversionFn(gDataset: AlignmentDataset, rdd: RDD[Coverage]): CoverageDataset
- implicit def AlignmentsToCoverageDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Coverage]): CoverageDataset
- implicit def AlignmentsToFeaturesConversionFn(gDataset: AlignmentDataset, rdd: RDD[Feature]): FeatureDataset
- implicit def AlignmentsToFeaturesDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Feature]): FeatureDataset
- implicit def AlignmentsToFragmentsConversionFn(gDataset: AlignmentDataset, rdd: RDD[Fragment]): FragmentDataset
- implicit def AlignmentsToFragmentsDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Fragment]): FragmentDataset
- implicit def AlignmentsToGenotypesConversionFn(gDataset: AlignmentDataset, rdd: RDD[Genotype]): GenotypeDataset
- implicit def AlignmentsToGenotypesDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Genotype]): GenotypeDataset
- implicit def AlignmentsToReadsConversionFn(gDataset: AlignmentDataset, rdd: RDD[Read]): ReadDataset
- implicit def AlignmentsToReadsDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Read]): ReadDataset
- implicit def AlignmentsToSequencesConversionFn(gDataset: AlignmentDataset, rdd: RDD[Sequence]): SequenceDataset
- implicit def AlignmentsToSequencesDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Sequence]): SequenceDataset
- implicit def AlignmentsToSlicesConversionFn(gDataset: AlignmentDataset, rdd: RDD[Slice]): SliceDataset
- implicit def AlignmentsToSlicesDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Slice]): SliceDataset
- implicit def AlignmentsToVariantContextConversionFn(gDataset: AlignmentDataset, rdd: RDD[VariantContext]): VariantContextDataset
- implicit def AlignmentsToVariantsConversionFn(gDataset: AlignmentDataset, rdd: RDD[Variant]): VariantDataset
- implicit def AlignmentsToVariantsDatasetConversionFn(gDataset: AlignmentDataset, ds: Dataset[Variant]): VariantDataset
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- implicit def coverageToAlignmentsConversionFn(gDataset: CoverageDataset, rdd: RDD[Alignment]): AlignmentDataset
- implicit def coverageToAlignmentsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Alignment]): AlignmentDataset
- implicit def coverageToCoverageConversionFn(gDataset: CoverageDataset, rdd: RDD[Coverage]): CoverageDataset
- implicit def coverageToFeaturesConversionFn(gDataset: CoverageDataset, rdd: RDD[Feature]): FeatureDataset
- implicit def coverageToFeaturesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Feature]): FeatureDataset
- implicit def coverageToFragmentsConversionFn(gDataset: CoverageDataset, rdd: RDD[Fragment]): FragmentDataset
- implicit def coverageToFragmentsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Fragment]): FragmentDataset
- implicit def coverageToGenotypesConversionFn(gDataset: CoverageDataset, rdd: RDD[Genotype]): GenotypeDataset
- implicit def coverageToGenotypesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Genotype]): GenotypeDataset
- implicit def coverageToReadsConversionFn(gDataset: CoverageDataset, rdd: RDD[Read]): ReadDataset
- implicit def coverageToReadsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Read]): ReadDataset
- implicit def coverageToSequencesConversionFn(gDataset: CoverageDataset, rdd: RDD[Sequence]): SequenceDataset
- implicit def coverageToSequencesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Sequence]): SequenceDataset
- implicit def coverageToSlicesConversionFn(gDataset: CoverageDataset, rdd: RDD[Slice]): SliceDataset
- implicit def coverageToSlicesDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Slice]): SliceDataset
- implicit def coverageToVariantContextConversionFn(gDataset: CoverageDataset, rdd: RDD[VariantContext]): VariantContextDataset
- implicit def coverageToVariantsConversionFn(gDataset: CoverageDataset, rdd: RDD[Variant]): VariantDataset
- implicit def coverageToVariantsDatasetConversionFn(gDataset: CoverageDataset, ds: Dataset[Variant]): VariantDataset
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- implicit def featuresToAlignmentsConversionFn(gDataset: FeatureDataset, rdd: RDD[Alignment]): AlignmentDataset
- implicit def featuresToAlignmentsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Alignment]): AlignmentDataset
- implicit def featuresToCoverageConversionFn(gDataset: FeatureDataset, rdd: RDD[Coverage]): CoverageDataset
- implicit def featuresToCoverageDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Coverage]): CoverageDataset
- implicit def featuresToFeaturesConversionFn(gDataset: FeatureDataset, rdd: RDD[Feature]): FeatureDataset
- implicit def featuresToFragmentsConversionFn(gDataset: FeatureDataset, rdd: RDD[Fragment]): FragmentDataset
- implicit def featuresToFragmentsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Fragment]): FragmentDataset
- implicit def featuresToGenotypesConversionFn(gDataset: FeatureDataset, rdd: RDD[Genotype]): GenotypeDataset
- implicit def featuresToGenotypesDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Genotype]): GenotypeDataset
- implicit def featuresToReadsConversionFn(gDataset: FeatureDataset, rdd: RDD[Read]): ReadDataset
- implicit def featuresToReadsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Read]): ReadDataset
- implicit def featuresToSequencesConversionFn(gDataset: FeatureDataset, rdd: RDD[Sequence]): SequenceDataset
- implicit def featuresToSequencesDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Sequence]): SequenceDataset
- implicit def featuresToSlicesConversionFn(gDataset: FeatureDataset, rdd: RDD[Slice]): SliceDataset
- implicit def featuresToSlicesDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Slice]): SliceDataset
- implicit def featuresToVariantContextConversionFn(gDataset: FeatureDataset, rdd: RDD[VariantContext]): VariantContextDataset
- implicit def featuresToVariantsConversionFn(gDataset: FeatureDataset, rdd: RDD[Variant]): VariantDataset
- implicit def featuresToVariantsDatasetConversionFn(gDataset: FeatureDataset, ds: Dataset[Variant]): VariantDataset
- implicit def fragmentsToAlignmentsConversionFn(gDataset: FragmentDataset, rdd: RDD[Alignment]): AlignmentDataset
- implicit def fragmentsToAlignmentsDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Alignment]): AlignmentDataset
- implicit def fragmentsToCoverageConversionFn(gDataset: FragmentDataset, rdd: RDD[Coverage]): CoverageDataset
- implicit def fragmentsToCoverageDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Coverage]): CoverageDataset
- implicit def fragmentsToFeaturesConversionFn(gDataset: FragmentDataset, rdd: RDD[Feature]): FeatureDataset
- implicit def fragmentsToFeaturesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Feature]): FeatureDataset
- implicit def fragmentsToFragmentsConversionFn(gDataset: FragmentDataset, rdd: RDD[Fragment]): FragmentDataset
- implicit def fragmentsToGenotypesConversionFn(gDataset: FragmentDataset, rdd: RDD[Genotype]): GenotypeDataset
- implicit def fragmentsToGenotypesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Genotype]): GenotypeDataset
- implicit def fragmentsToReadsConversionFn(gDataset: FragmentDataset, rdd: RDD[Read]): ReadDataset
- implicit def fragmentsToReadsDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Read]): ReadDataset
- implicit def fragmentsToSequencesConversionFn(gDataset: FragmentDataset, rdd: RDD[Sequence]): SequenceDataset
- implicit def fragmentsToSequencesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Sequence]): SequenceDataset
- implicit def fragmentsToSlicesConversionFn(gDataset: FragmentDataset, rdd: RDD[Slice]): SliceDataset
- implicit def fragmentsToSlicesDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Slice]): SliceDataset
- implicit def fragmentsToVariantContextConversionFn(gDataset: FragmentDataset, rdd: RDD[VariantContext]): VariantContextDataset
- implicit def fragmentsToVariantsConversionFn(gDataset: FragmentDataset, rdd: RDD[Variant]): VariantDataset
- implicit def fragmentsToVariantsDatasetConversionFn(gDataset: FragmentDataset, ds: Dataset[Variant]): VariantDataset
- implicit def genericToAlignmentsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Alignment]): AlignmentDataset
- implicit def genericToCoverageConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Coverage]): CoverageDataset
- implicit def genericToFeatureConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Feature]): FeatureDataset
- implicit def genericToFragmentsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Fragment]): FragmentDataset
- implicit def genericToGenotypesConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Genotype]): GenotypeDataset
- implicit def genericToReadsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Read]): ReadDataset
- implicit def genericToSequencesConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Sequence]): SequenceDataset
- implicit def genericToSlicesConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Slice]): SliceDataset
- implicit def genericToVariantContextsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[VariantContext]): VariantContextDataset
- implicit def genericToVariantsConversionFn[Y <: GenericGenomicDataset[_, _]](gDataset: Y, rdd: RDD[Variant]): VariantDataset
- implicit def genotypesToAlignmentsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Alignment]): AlignmentDataset
- implicit def genotypesToAlignmentsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Alignment]): AlignmentDataset
- implicit def genotypesToCoverageConversionFn(gDataset: GenotypeDataset, rdd: RDD[Coverage]): CoverageDataset
- implicit def genotypesToCoverageDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Coverage]): CoverageDataset
- implicit def genotypesToFeaturesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Feature]): FeatureDataset
- implicit def genotypesToFeaturesDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Feature]): FeatureDataset
- implicit def genotypesToFragmentsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Fragment]): FragmentDataset
- implicit def genotypesToFragmentsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Fragment]): FragmentDataset
- implicit def genotypesToGenotypesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Genotype]): GenotypeDataset
- implicit def genotypesToReadsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Read]): ReadDataset
- implicit def genotypesToReadsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Read]): ReadDataset
- implicit def genotypesToSequencesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Sequence]): SequenceDataset
- implicit def genotypesToSequencesDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Sequence]): SequenceDataset
- implicit def genotypesToSlicesConversionFn(gDataset: GenotypeDataset, rdd: RDD[Slice]): SliceDataset
- implicit def genotypesToSlicesDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Slice]): SliceDataset
- implicit def genotypesToVariantContextConversionFn(gDataset: GenotypeDataset, rdd: RDD[VariantContext]): VariantContextDataset
- implicit def genotypesToVariantsConversionFn(gDataset: GenotypeDataset, rdd: RDD[Variant]): VariantDataset
- implicit def genotypesToVariantsDatasetConversionFn(gDataset: GenotypeDataset, ds: Dataset[Variant]): VariantDataset
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- implicit def readsToAlignmentsConversionFn(gDataset: ReadDataset, rdd: RDD[Alignment]): AlignmentDataset
- implicit def readsToAlignmentsDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Alignment]): AlignmentDataset
- implicit def readsToCoverageConversionFn(gDataset: ReadDataset, rdd: RDD[Coverage]): CoverageDataset
- implicit def readsToCoverageDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Coverage]): CoverageDataset
- implicit def readsToFeaturesConversionFn(gDataset: ReadDataset, rdd: RDD[Feature]): FeatureDataset
- implicit def readsToFeaturesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Feature]): FeatureDataset
- implicit def readsToFragmentsConversionFn(gDataset: ReadDataset, rdd: RDD[Fragment]): FragmentDataset
- implicit def readsToFragmentsDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Fragment]): FragmentDataset
- implicit def readsToGenotypesConversionFn(gDataset: ReadDataset, rdd: RDD[Genotype]): GenotypeDataset
- implicit def readsToGenotypesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Genotype]): GenotypeDataset
- implicit def readsToReadsConversionFn(gDataset: ReadDataset, rdd: RDD[Read]): ReadDataset
- implicit def readsToSequencesConversionFn(gDataset: ReadDataset, rdd: RDD[Sequence]): SequenceDataset
- implicit def readsToSequencesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Sequence]): SequenceDataset
- implicit def readsToSlicesConversionFn(gDataset: ReadDataset, rdd: RDD[Slice]): SliceDataset
- implicit def readsToSlicesDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Slice]): SliceDataset
- implicit def readsToVariantContextsConversionFn(gDataset: ReadDataset, rdd: RDD[VariantContext]): VariantContextDataset
- implicit def readsToVariantsConversionFn(gDataset: ReadDataset, rdd: RDD[Variant]): VariantDataset
- implicit def readsToVariantsDatasetConversionFn(gDataset: ReadDataset, ds: Dataset[Variant]): VariantDataset
- implicit def recordToRichRecord(record: Alignment): RichAlignment
- implicit def sequencesToAlignmentsConversionFn(gDataset: SequenceDataset, rdd: RDD[Alignment]): AlignmentDataset
- implicit def sequencesToAlignmentsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Alignment]): AlignmentDataset
- implicit def sequencesToCoverageConversionFn(gDataset: SequenceDataset, rdd: RDD[Coverage]): CoverageDataset
- implicit def sequencesToCoverageDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Coverage]): CoverageDataset
- implicit def sequencesToFeaturesConversionFn(gDataset: SequenceDataset, rdd: RDD[Feature]): FeatureDataset
- implicit def sequencesToFeaturesDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Feature]): FeatureDataset
- implicit def sequencesToFragmentsConversionFn(gDataset: SequenceDataset, rdd: RDD[Fragment]): FragmentDataset
- implicit def sequencesToFragmentsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Fragment]): FragmentDataset
- implicit def sequencesToGenotypesConversionFn(gDataset: SequenceDataset, rdd: RDD[Genotype]): GenotypeDataset
- implicit def sequencesToGenotypesDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Genotype]): GenotypeDataset
- implicit def sequencesToReadsConversionFn(gDataset: SequenceDataset, rdd: RDD[Read]): ReadDataset
- implicit def sequencesToReadsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Read]): ReadDataset
- implicit def sequencesToSequencesConversionFn(gDataset: SequenceDataset, rdd: RDD[Sequence]): SequenceDataset
- implicit def sequencesToSlicesConversionFn(gDataset: SequenceDataset, rdd: RDD[Slice]): SliceDataset
- implicit def sequencesToSlicesDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Slice]): SliceDataset
- implicit def sequencesToVariantContextsConversionFn(gDataset: SequenceDataset, rdd: RDD[VariantContext]): VariantContextDataset
- implicit def sequencesToVariantsConversionFn(gDataset: SequenceDataset, rdd: RDD[Variant]): VariantDataset
- implicit def sequencesToVariantsDatasetConversionFn(gDataset: SequenceDataset, ds: Dataset[Variant]): VariantDataset
- implicit def slicesToAlignmentsConversionFn(gDataset: SliceDataset, rdd: RDD[Alignment]): AlignmentDataset
- implicit def slicesToAlignmentsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Alignment]): AlignmentDataset
- implicit def slicesToCoverageConversionFn(gDataset: SliceDataset, rdd: RDD[Coverage]): CoverageDataset
- implicit def slicesToCoverageDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Coverage]): CoverageDataset
- implicit def slicesToFeaturesConversionFn(gDataset: SliceDataset, rdd: RDD[Feature]): FeatureDataset
- implicit def slicesToFeaturesDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Feature]): FeatureDataset
- implicit def slicesToFragmentsConversionFn(gDataset: SliceDataset, rdd: RDD[Fragment]): FragmentDataset
- implicit def slicesToFragmentsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Fragment]): FragmentDataset
- implicit def slicesToGenotypesConversionFn(gDataset: SliceDataset, rdd: RDD[Genotype]): GenotypeDataset
- implicit def slicesToGenotypesDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Genotype]): GenotypeDataset
- implicit def slicesToReadsConversionFn(gDataset: SliceDataset, rdd: RDD[Read]): ReadDataset
- implicit def slicesToReadsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Read]): ReadDataset
- implicit def slicesToSequencesConversionFn(gDataset: SliceDataset, rdd: RDD[Sequence]): SequenceDataset
- implicit def slicesToSequencesDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Sequence]): SequenceDataset
- implicit def slicesToSlicesConversionFn(gDataset: SliceDataset, rdd: RDD[Slice]): SliceDataset
- implicit def slicesToVariantContextsConversionFn(gDataset: SliceDataset, rdd: RDD[VariantContext]): VariantContextDataset
- implicit def slicesToVariantsConversionFn(gDataset: SliceDataset, rdd: RDD[Variant]): VariantDataset
- implicit def slicesToVariantsDatasetConversionFn(gDataset: SliceDataset, ds: Dataset[Variant]): VariantDataset
- implicit def sparkContextToADAMContext(sc: SparkContext): ADAMContext
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- implicit def variantContextsToAlignmentsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Alignment]): AlignmentDataset
- implicit def variantContextsToCoverageConversionFn(gDataset: VariantContextDataset, rdd: RDD[Coverage]): CoverageDataset
- implicit def variantContextsToFeaturesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Feature]): FeatureDataset
- implicit def variantContextsToFragmentsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Fragment]): FragmentDataset
- implicit def variantContextsToGenotypesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Genotype]): GenotypeDataset
- implicit def variantContextsToReadsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Read]): ReadDataset
- implicit def variantContextsToSequencesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Sequence]): SequenceDataset
- implicit def variantContextsToSlicesConversionFn(gDataset: VariantContextDataset, rdd: RDD[Slice]): SliceDataset
- implicit def variantContextsToVariantContextsConversionFn(gDataset: VariantContextDataset, rdd: RDD[VariantContext]): VariantContextDataset
- implicit def variantContextsToVariantsConversionFn(gDataset: VariantContextDataset, rdd: RDD[Variant]): VariantDataset
- implicit def variantsToAlignmentsConversionFn(gDataset: VariantDataset, rdd: RDD[Alignment]): AlignmentDataset
- implicit def variantsToAlignmentsDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Alignment]): AlignmentDataset
- implicit def variantsToCoverageConversionFn(gDataset: VariantDataset, rdd: RDD[Coverage]): CoverageDataset
- implicit def variantsToCoverageDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Coverage]): CoverageDataset
- implicit def variantsToFeaturesConversionFn(gDataset: VariantDataset, rdd: RDD[Feature]): FeatureDataset
- implicit def variantsToFeaturesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Feature]): FeatureDataset
- implicit def variantsToFragmentsConversionFn(gDataset: VariantDataset, rdd: RDD[Fragment]): FragmentDataset
- implicit def variantsToFragmentsDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Fragment]): FragmentDataset
- implicit def variantsToGenotypesConversionFn(gDataset: VariantDataset, rdd: RDD[Genotype]): GenotypeDataset
- implicit def variantsToGenotypesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Genotype]): GenotypeDataset
- implicit def variantsToReadsConversionFn(gDataset: VariantDataset, rdd: RDD[Read]): ReadDataset
- implicit def variantsToReadsDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Read]): ReadDataset
- implicit def variantsToSequencesConversionFn(gDataset: VariantDataset, rdd: RDD[Sequence]): SequenceDataset
- implicit def variantsToSequencesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Sequence]): SequenceDataset
- implicit def variantsToSlicesConversionFn(gDataset: VariantDataset, rdd: RDD[Slice]): SliceDataset
- implicit def variantsToSlicesDatasetConversionFn(gDataset: VariantDataset, ds: Dataset[Slice]): SliceDataset
- implicit def variantsToVariantContextConversionFn(gDataset: VariantDataset, rdd: RDD[VariantContext]): VariantContextDataset
- implicit def variantsToVariantsConversionFn(gDataset: VariantDataset, rdd: RDD[Variant]): VariantDataset
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