object ReadDataset

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  4. def apply(rdd: RDD[Read], references: SequenceDictionary, samples: Iterable[Sample]): ReadDataset

    A genomic dataset that wraps an RDD of Read data.

    A genomic dataset that wraps an RDD of Read data.

    rdd

    The underlying Read RDD to build from.

    references

    The reference genome these data are aligned to.

    samples

    Samples for these reads.

    returns

    Returns a new ReadDataset.

  5. def apply(rdd: RDD[Read]): ReadDataset

    A genomic dataset that wraps an RDD of Read data.

    A genomic dataset that wraps an RDD of Read data.

    rdd

    The underlying Read RDD to build from.

    returns

    Returns a new ReadDataset.

  6. def apply(ds: Dataset[Read], references: SequenceDictionary, samples: Iterable[Sample]): ReadDataset

    A genomic dataset that wraps a dataset of Read data.

    A genomic dataset that wraps a dataset of Read data.

    ds

    A Dataset of genomic Reads.

    references

    The reference genome these data are aligned to.

    samples

    Samples for these reads.

  7. def apply(ds: Dataset[Read]): ReadDataset

    A genomic dataset that wraps a dataset of Read data.

    A genomic dataset that wraps a dataset of Read data.

    ds

    A Dataset of genomic Reads.

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