case class TranscriptEffect(alternateAllele: Option[String] = None, effects: Seq[String] = Seq(), impact: Option[String] = None, geneName: Option[String] = None, geneId: Option[String] = None, featureType: Option[String] = None, featureId: Option[String] = None, biotype: Option[String] = None, strand: Option[String] = None, rank: Option[Int] = None, total: Option[Int] = None, genomicHgvs: Option[String] = None, transcriptHgvs: Option[String] = None, proteinHgvs: Option[String] = None, cdnaPosition: Option[Int] = None, cdnaLength: Option[Int] = None, codingSequencePosition: Option[Int] = None, codingSequenceLength: Option[Int] = None, referenceCodingSequence: Option[String] = None, alternateCodingSequence: Option[String] = None, proteinPosition: Option[Int] = None, proteinLength: Option[Int] = None, referenceProteinSequence: Option[String] = None, alternateProteinSequence: Option[String] = None, distance: Option[Int] = None, messages: Seq[String] = Seq()) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. TranscriptEffect
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new TranscriptEffect(alternateAllele: Option[String] = None, effects: Seq[String] = Seq(), impact: Option[String] = None, geneName: Option[String] = None, geneId: Option[String] = None, featureType: Option[String] = None, featureId: Option[String] = None, biotype: Option[String] = None, strand: Option[String] = None, rank: Option[Int] = None, total: Option[Int] = None, genomicHgvs: Option[String] = None, transcriptHgvs: Option[String] = None, proteinHgvs: Option[String] = None, cdnaPosition: Option[Int] = None, cdnaLength: Option[Int] = None, codingSequencePosition: Option[Int] = None, codingSequenceLength: Option[Int] = None, referenceCodingSequence: Option[String] = None, alternateCodingSequence: Option[String] = None, proteinPosition: Option[Int] = None, proteinLength: Option[Int] = None, referenceProteinSequence: Option[String] = None, alternateProteinSequence: Option[String] = None, distance: Option[Int] = None, messages: Seq[String] = Seq())

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val alternateAllele: Option[String]
  5. val alternateCodingSequence: Option[String]
  6. val alternateProteinSequence: Option[String]
  7. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  8. val biotype: Option[String]
  9. def canEqual(that: Any): Boolean
    Definition Classes
    TranscriptEffect → Equals
  10. val cdnaLength: Option[Int]
  11. val cdnaPosition: Option[Int]
  12. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  13. val codingSequenceLength: Option[Int]
  14. val codingSequencePosition: Option[Int]
  15. val distance: Option[Int]
  16. val effects: Seq[String]
  17. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  18. val featureId: Option[String]
  19. val featureType: Option[String]
  20. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  21. val geneId: Option[String]
  22. val geneName: Option[String]
  23. val genomicHgvs: Option[String]
  24. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  25. val impact: Option[String]
  26. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  27. val messages: Seq[String]
  28. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  29. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  30. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  31. def productArity: Int
    Definition Classes
    TranscriptEffect → Product
  32. def productElement(i: Int): Any
    Definition Classes
    TranscriptEffect → Product
  33. val proteinHgvs: Option[String]
  34. val proteinLength: Option[Int]
  35. val proteinPosition: Option[Int]
  36. val rank: Option[Int]
  37. val referenceCodingSequence: Option[String]
  38. val referenceProteinSequence: Option[String]
  39. val strand: Option[String]
  40. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  41. def toAvro: formats.avro.TranscriptEffect
  42. val total: Option[Int]
  43. val transcriptHgvs: Option[String]
  44. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  45. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  46. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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