case class Variant(referenceName: Option[String] = None, start: Option[Long] = None, end: Option[Long] = None, names: Seq[String] = Seq(), splitFromMultiAllelic: Option[Boolean] = None, referenceAllele: Option[String] = None, alternateAllele: Option[String] = None, quality: Option[Double] = None, filtersApplied: Option[Boolean] = None, filtersPassed: Option[Boolean] = None, filtersFailed: Seq[String] = Seq(), annotation: Option[VariantAnnotation] = None) extends Product with Serializable
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Instance Constructors
- new Variant(referenceName: Option[String] = None, start: Option[Long] = None, end: Option[Long] = None, names: Seq[String] = Seq(), splitFromMultiAllelic: Option[Boolean] = None, referenceAllele: Option[String] = None, alternateAllele: Option[String] = None, quality: Option[Double] = None, filtersApplied: Option[Boolean] = None, filtersPassed: Option[Boolean] = None, filtersFailed: Seq[String] = Seq(), annotation: Option[VariantAnnotation] = None)
Value Members
-
final
def
!=(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
-
final
def
##(): Int
- Definition Classes
- AnyRef → Any
-
final
def
==(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
- val alternateAllele: Option[String]
- val annotation: Option[VariantAnnotation]
-
final
def
asInstanceOf[T0]: T0
- Definition Classes
- Any
-
def
canEqual(that: Any): Boolean
- Definition Classes
- Variant → Equals
-
def
clone(): AnyRef
- Attributes
- protected[lang]
- Definition Classes
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- Annotations
- @throws( ... ) @native()
- val end: Option[Long]
-
final
def
eq(arg0: AnyRef): Boolean
- Definition Classes
- AnyRef
- val filtersApplied: Option[Boolean]
- val filtersFailed: Seq[String]
- val filtersPassed: Option[Boolean]
-
def
finalize(): Unit
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- protected[lang]
- Definition Classes
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- Annotations
- @throws( classOf[java.lang.Throwable] )
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final
def
getClass(): Class[_]
- Definition Classes
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- Annotations
- @native()
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final
def
isInstanceOf[T0]: Boolean
- Definition Classes
- Any
- val names: Seq[String]
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final
def
ne(arg0: AnyRef): Boolean
- Definition Classes
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final
def
notify(): Unit
- Definition Classes
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- @native()
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final
def
notifyAll(): Unit
- Definition Classes
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- Annotations
- @native()
-
def
productArity: Int
- Definition Classes
- Variant → Product
-
def
productElement(i: Int): Any
- Definition Classes
- Variant → Product
- val quality: Option[Double]
- val referenceAllele: Option[String]
- val referenceName: Option[String]
- val splitFromMultiAllelic: Option[Boolean]
- val start: Option[Long]
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final
def
synchronized[T0](arg0: ⇒ T0): T0
- Definition Classes
- AnyRef
- def toAvro: formats.avro.Variant
-
final
def
wait(): Unit
- Definition Classes
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- @throws( ... )
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final
def
wait(arg0: Long, arg1: Int): Unit
- Definition Classes
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- Annotations
- @throws( ... )
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final
def
wait(arg0: Long): Unit
- Definition Classes
- AnyRef
- Annotations
- @throws( ... ) @native()