object SliceDataset

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  4. def apply(rdd: RDD[Slice], references: SequenceDictionary, samples: Iterable[Sample]): SliceDataset

    Builds a SliceDataset given a sequence dictionary.

    Builds a SliceDataset given a sequence dictionary.

    rdd

    The underlying Slice RDD to build from.

    references

    The reference genome these data are aligned to.

    samples

    Samples for these sequences.

    returns

    Returns a new SliceDataset.

  5. def apply(rdd: RDD[Slice]): SliceDataset

    A genomic dataset that wraps an RDD of Sequence data.

    A genomic dataset that wraps an RDD of Sequence data.

    rdd

    The underlying Slice RDD to build from.

    returns

    Returns a new SliceDataset.

  6. def apply(ds: Dataset[Slice], references: SequenceDictionary, samples: Iterable[Sample]): SliceDataset

    A genomic dataset that wraps a dataset of Slice data.

    A genomic dataset that wraps a dataset of Slice data.

    ds

    A Dataset of slices.

    references

    The reference genome these data are aligned to.

    samples

    Samples for these slices.

  7. def apply(ds: Dataset[Slice]): SliceDataset

    A genomic dataset that wraps a dataset of Slice data.

    A genomic dataset that wraps a dataset of Slice data.

    ds

    A Dataset of slices.

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