class ADAMVCFOutputFormat[K] extends KeyIgnoringVCFOutputFormat[K] with Serializable
Wrapper for Hadoop-BAM to work around requirement for no-args constructor.
- K
The key type. Keys are not written.
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- ADAMVCFOutputFormat
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- KeyIgnoringVCFOutputFormat
- VCFOutputFormat
- FileOutputFormat
- OutputFormat
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Instance Constructors
- new ADAMVCFOutputFormat()
Value Members
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final
def
!=(arg0: Any): Boolean
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final
def
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final
def
asInstanceOf[T0]: T0
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def
checkOutputSpecs(arg0: JobContext): Unit
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- FileOutputFormat → OutputFormat
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def
clone(): AnyRef
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finalize(): Unit
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getClass(): Class[_]
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def
getDefaultWorkFile(arg0: TaskAttemptContext, arg1: String): Path
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- FileOutputFormat
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- @throws( classOf[java.io.IOException] )
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def
getHeader(): VCFHeader
- Definition Classes
- KeyIgnoringVCFOutputFormat
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def
getOutputCommitter(arg0: TaskAttemptContext): OutputCommitter
- Definition Classes
- FileOutputFormat → OutputFormat
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- @throws( classOf[java.io.IOException] )
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def
getRecordWriter(context: TaskAttemptContext): RecordWriter[K, VariantContextWritable]
- Definition Classes
- ADAMVCFOutputFormat → KeyIgnoringVCFOutputFormat → FileOutputFormat → OutputFormat
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def
getRecordWriter(arg0: TaskAttemptContext, arg1: Path): RecordWriter[K, VariantContextWritable]
- Definition Classes
- KeyIgnoringVCFOutputFormat
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def
hashCode(): Int
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final
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notify(): Unit
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final
def
notifyAll(): Unit
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def
readHeaderFrom(arg0: SeekableStream): Unit
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- KeyIgnoringVCFOutputFormat
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- @throws( classOf[java.io.IOException] )
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def
readHeaderFrom(arg0: Path, arg1: FileSystem): Unit
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- KeyIgnoringVCFOutputFormat
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- @throws( classOf[java.io.IOException] )
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def
setHeader(arg0: VCFHeader): Unit
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- KeyIgnoringVCFOutputFormat
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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def
toString(): String
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wait(): Unit
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def
wait(arg0: Long, arg1: Int): Unit
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wait(arg0: Long): Unit
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