class VariantContext extends Serializable
A representation of all variation data at a single variant.
This class represents an equivalent to a single allele from a VCF line, and is the ADAM equivalent to htsjdk.variant.variantcontext.VariantContext.
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VariantContext(position: ReferencePosition, variant: RichVariant, genotypes: Iterable[Genotype])
- position
The locus that the variant is at.
- variant
The variant allele that is contained in this VariantContext.
- genotypes
An iterable collection of Genotypes where this allele was called. Equivalent to the per-sample FORMAT fields in a VCF.
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