case class VCFInFormatter extends InFormatter[VariantContext, VariantContext, VariantContextDataset, VCFInFormatter] with Product with Serializable

Linear Supertypes
Product, Equals, InFormatter[VariantContext, VariantContext, VariantContextDataset, VCFInFormatter], Serializable, Serializable, AnyRef, Any
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Inherited
  1. VCFInFormatter
  2. Product
  3. Equals
  4. InFormatter
  5. Serializable
  6. Serializable
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  8. Any
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Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  6. val companion: VCFInFormatter.type
    Attributes
    protected
    Definition Classes
    VCFInFormatterInFormatter
  7. val conf: Configuration
  8. val converter: VariantContextConverter
  9. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  10. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  11. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  12. val headerLines: Seq[VCFHeaderLine]
  13. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  14. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  15. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  16. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  17. val samples: Seq[String]
  18. val sequences: SequenceDictionary
  19. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  20. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  21. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  22. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  23. def write(os: OutputStream, iter: Iterator[VariantContext]): Unit

    Writes variant contexts to an output stream in VCF format.

    Writes variant contexts to an output stream in VCF format.

    os

    An OutputStream connected to a process we are piping to.

    iter

    An iterator of records to write.

    Definition Classes
    VCFInFormatterInFormatter

Inherited from Product

Inherited from Equals

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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