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org.bdgenomics.adam.ds

ADAMSaveAnyArgs

trait ADAMSaveAnyArgs extends SaveArgs

Argument configuration for saving any output format.

Linear Supertypes
SaveArgs, ParquetRDDArgs, AnyRef, Any
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Inherited
  1. ADAMSaveAnyArgs
  2. SaveArgs
  3. ParquetRDDArgs
  4. AnyRef
  5. Any
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Visibility
  1. Public
  2. All

Abstract Value Members

  1. abstract val asSingleFile: Boolean

    If true and saving as a legacy format, we will write shards so that they can be merged into a single file.

    If true and saving as a legacy format, we will write shards so that they can be merged into a single file.

    See also

    deferMerging

  2. abstract val blockSize: Int
    Definition Classes
    ParquetRDDArgs
  3. abstract val compressionCodec: CompressionCodecName
    Definition Classes
    ParquetRDDArgs
  4. abstract val deferMerging: Boolean

    If true and asSingleFile is true, we will not merge the shards once we write them, and will leave them for the user to merge later.

    If true and asSingleFile is true, we will not merge the shards once we write them, and will leave them for the user to merge later. If false and asSingleFile is true, then we will merge the shards on write. If asSingleFile is false, this is ignored.

    See also

    asSingleFile

  5. abstract val disableDictionaryEncoding: Boolean
    Definition Classes
    ParquetRDDArgs
  6. abstract val disableFastConcat: Boolean

    If asSingleFile is true and deferMerging is false, disables the use of the fast file concatenation engine.

  7. abstract val outputPath: String
    Definition Classes
    SaveArgs
  8. abstract val pageSize: Int
    Definition Classes
    ParquetRDDArgs
  9. abstract val sortFastqOutput: Boolean

    If true and saving as FASTQ, we will sort by read name.

Concrete Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  5. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  6. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  7. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  8. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  9. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  10. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  11. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  12. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  13. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  14. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  15. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  16. def toString(): String
    Definition Classes
    AnyRef → Any
  17. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  18. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  19. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()

Inherited from SaveArgs

Inherited from ParquetRDDArgs

Inherited from AnyRef

Inherited from Any

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