case class VariantAnnotation(ancestralAllele: Option[String] = None, alleleCount: Option[Int] = None, readDepth: Option[Int] = None, forwardReadDepth: Option[Int] = None, reverseReadDepth: Option[Int] = None, referenceReadDepth: Option[Int] = None, referenceForwardReadDepth: Option[Int] = None, referenceReverseReadDepth: Option[Int] = None, alleleFrequency: Option[Float] = None, cigar: Option[String] = None, dbSnp: Option[Boolean] = None, hapMap2: Option[Boolean] = None, hapMap3: Option[Boolean] = None, validated: Option[Boolean] = None, thousandGenomes: Option[Boolean] = None, somatic: Option[Boolean] = None, transcriptEffects: Seq[TranscriptEffect] = Seq(), attributes: Map[String, String] = Map()) extends Product with Serializable

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Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. VariantAnnotation
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
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Instance Constructors

  1. new VariantAnnotation(ancestralAllele: Option[String] = None, alleleCount: Option[Int] = None, readDepth: Option[Int] = None, forwardReadDepth: Option[Int] = None, reverseReadDepth: Option[Int] = None, referenceReadDepth: Option[Int] = None, referenceForwardReadDepth: Option[Int] = None, referenceReverseReadDepth: Option[Int] = None, alleleFrequency: Option[Float] = None, cigar: Option[String] = None, dbSnp: Option[Boolean] = None, hapMap2: Option[Boolean] = None, hapMap3: Option[Boolean] = None, validated: Option[Boolean] = None, thousandGenomes: Option[Boolean] = None, somatic: Option[Boolean] = None, transcriptEffects: Seq[TranscriptEffect] = Seq(), attributes: Map[String, String] = Map())

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. val alleleCount: Option[Int]
  5. val alleleFrequency: Option[Float]
  6. val ancestralAllele: Option[String]
  7. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  8. val attributes: Map[String, String]
  9. def canEqual(that: Any): Boolean
    Definition Classes
    VariantAnnotation → Equals
  10. val cigar: Option[String]
  11. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  12. val dbSnp: Option[Boolean]
  13. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  14. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  15. val forwardReadDepth: Option[Int]
  16. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  17. val hapMap2: Option[Boolean]
  18. val hapMap3: Option[Boolean]
  19. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  20. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  21. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  22. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  23. def productArity: Int
    Definition Classes
    VariantAnnotation → Product
  24. def productElement(i: Int): Any
    Definition Classes
    VariantAnnotation → Product
  25. val readDepth: Option[Int]
  26. val referenceForwardReadDepth: Option[Int]
  27. val referenceReadDepth: Option[Int]
  28. val referenceReverseReadDepth: Option[Int]
  29. val reverseReadDepth: Option[Int]
  30. val somatic: Option[Boolean]
  31. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  32. val thousandGenomes: Option[Boolean]
  33. def toAvro: formats.avro.VariantAnnotation
  34. val transcriptEffects: Seq[TranscriptEffect]
  35. val validated: Option[Boolean]
  36. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  37. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  38. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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