class ADAMCRAMOutputFormatHeaderLess[K] extends KeyIgnoringCRAMOutputFormat[K] with Serializable
Wrapper for Hadoop-BAM to work around requirement for no-args constructor.
- K
The key type. Keys are not written.
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- ADAMCRAMOutputFormatHeaderLess
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- KeyIgnoringCRAMOutputFormat
- CRAMOutputFormat
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Instance Constructors
- new ADAMCRAMOutputFormatHeaderLess()
Value Members
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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final
def
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final
def
asInstanceOf[T0]: T0
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def
checkOutputSpecs(arg0: JobContext): Unit
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def
clone(): AnyRef
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def
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def
getDefaultWorkFile(arg0: TaskAttemptContext, arg1: String): Path
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def
getOutputCommitter(arg0: TaskAttemptContext): OutputCommitter
- Definition Classes
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def
getRecordWriter(context: TaskAttemptContext): RecordWriter[K, SAMRecordWritable]
- Definition Classes
- ADAMCRAMOutputFormatHeaderLess → KeyIgnoringCRAMOutputFormat → FileOutputFormat → OutputFormat
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def
getRecordWriter(arg0: TaskAttemptContext, arg1: Path): RecordWriter[K, SAMRecordWritable]
- Definition Classes
- KeyIgnoringCRAMOutputFormat
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- @throws( classOf[java.io.IOException] )
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def
getSAMHeader(): SAMFileHeader
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- KeyIgnoringCRAMOutputFormat
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def
getWriteHeader(): Boolean
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def
hashCode(): Int
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final
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isInstanceOf[T0]: Boolean
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notify(): Unit
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def
notifyAll(): Unit
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def
readSAMHeaderFrom(arg0: InputStream, arg1: Configuration): Unit
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- KeyIgnoringCRAMOutputFormat
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def
readSAMHeaderFrom(arg0: Path, arg1: Configuration): Unit
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def
setSAMHeader(arg0: SAMFileHeader): Unit
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- KeyIgnoringCRAMOutputFormat
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def
setWriteHeader(arg0: Boolean): Unit
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def
synchronized[T0](arg0: ⇒ T0): T0
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def
toString(): String
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wait(): Unit
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