case class Coverage(referenceName: String, start: Long, end: Long, count: Double, optSampleId: Option[String] = None) extends Product with Serializable
Coverage record for CoverageDataset.
Contains Region indexed by reference name, start and end, as well as the average coverage at each base pair in that region.
- referenceName
The chromosome that this coverage was observed on.
- start
The start coordinate of the region where this coverage value was observed.
- end
The end coordinate of the region where this coverage value was observed.
- count
The average coverage across this region.
- optSampleId
Option of sampleId for this Coverage record
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new
Coverage(referenceName: String, start: Long, end: Long, count: Double, optSampleId: Option[String] = None)
- referenceName
The chromosome that this coverage was observed on.
- start
The start coordinate of the region where this coverage value was observed.
- end
The end coordinate of the region where this coverage value was observed.
- count
The average coverage across this region.
- optSampleId
Option of sampleId for this Coverage record
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- val count: Double
- val end: Long
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- val optSampleId: Option[String]
- val referenceName: String
- val start: Long
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def
synchronized[T0](arg0: ⇒ T0): T0
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def
toFeature: Feature
Converts Coverage to Feature, setting Coverage count in the score attribute.
Converts Coverage to Feature, setting Coverage count in the score attribute.
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Feature built from Coverage
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def
toSqlFeature: Feature
Converts Coverage to a Feature case class, for use with Spark SQL.
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(Since version ) see corresponding Javadoc for more information.