object GenotypeDataset extends Serializable

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  4. def apply(ds: Dataset[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeDataset

    Builds a GenotypeDataset from a Dataset.

    Builds a GenotypeDataset from a Dataset.

    ds

    The underlying Genotype Dataset.

    sequences

    The sequence dictionary for the genomic dataset.

    samples

    The samples for the genomic dataset.

    headerLines

    The header lines for the genomic dataset.

    returns

    A new GenotypeDataset.

  5. def apply(ds: Dataset[Genotype], references: Iterable[Reference], samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeDataset

    Builds a GenotypeDataset from a Dataset.

    Builds a GenotypeDataset from a Dataset.

    ds

    The underlying Genotype Dataset.

    references

    The references for the genomic dataset.

    samples

    The samples for the genomic dataset.

    headerLines

    The header lines for the genomic dataset.

    returns

    A new GenotypeDataset.

  6. def apply(ds: Dataset[Genotype]): GenotypeDataset

    Builds a GenotypeDataset from a Dataset.

    Builds a GenotypeDataset from a Dataset.

    ds

    The underlying Genotype Dataset.

    returns

    A new GenotypeDataset.

  7. def apply(rdd: RDD[Genotype], sequences: SequenceDictionary, samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine] = DefaultHeaderLines.allHeaderLines): GenotypeDataset

    Builds a GenotypeDataset from an RDD.

    Builds a GenotypeDataset from an RDD.

    rdd

    The underlying Genotype RDD.

    samples

    The samples for the genomic dataset.

    headerLines

    The header lines for the genomic dataset.

    returns

    A new GenotypeDataset.

  8. def apply(rdd: RDD[Genotype], references: Iterable[Reference], samples: Iterable[Sample], headerLines: Seq[VCFHeaderLine]): GenotypeDataset

    Builds a GenotypeDataset from an RDD.

    Builds a GenotypeDataset from an RDD.

    rdd

    The underlying Genotype RDD.

    references

    The references for the genomic dataset.

    samples

    The samples for the genomic dataset.

    headerLines

    The header lines for the genomic dataset.

    returns

    A new GenotypeDataset.

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