object FileExtensions
Match path names to file extensions.
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def
is2BitExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches a 2bit format file extension.
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def
isBamExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches a BAM/CRAM/SAM format file extension.
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def
isBedExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches a BED6/12 format file extension.
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def
isDictExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches an HTSJDK sequence dictionary (.dict) extension.
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def
isFastaExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches a FASTA format file extension.
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def
isFastqExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches a FASTQ format file extension.
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def
isGenomeExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches a Bedtools genome file (.genome) extension.
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def
isGff3Ext(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches a GFF3 format file extension.
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def
isGtfExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches a GFF2/GTF format file extension.
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def
isGzip(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches a GZIP format file extension.
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def
isInterleavedFastqExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches an interleaved FASTQ format file extension.
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def
isIntervalListExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches an IntervalList format file extension.
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def
isNarrowPeakExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches a NarrowPeak format file extension.
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def
isTextExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches a text file (.txt) extension.
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def
isVcfExt(pathName: String): Boolean
- pathName
The path name to match.
- returns
Returns true if the path name matches a VCF format file extension.
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(Since version ) see corresponding Javadoc for more information.