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org.bdgenomics.adam.projections

TranscriptEffectField

object TranscriptEffectField extends FieldEnumeration

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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Inherited
  1. TranscriptEffectField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Type Members

  1. class SchemaVal extends Val with FieldValue

    An enumerated field that is part of this schema.

    An enumerated field that is part of this schema.

    Definition Classes
    FieldEnumeration
  2. class Val extends Value with Serializable
    Attributes
    protected
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID()
  3. abstract class Value extends Ordered[Value] with Serializable
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID()
  4. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable
    Definition Classes
    Enumeration

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. final def SchemaValue: SchemaVal
    Attributes
    protected
    Definition Classes
    FieldEnumeration
  5. final def Value(i: Int, name: String): Value
    Attributes
    protected
    Definition Classes
    Enumeration
  6. final def Value(name: String): Value
    Attributes
    protected
    Definition Classes
    Enumeration
  7. final def Value(i: Int): Value
    Attributes
    protected
    Definition Classes
    Enumeration
  8. final def Value: Value
    Attributes
    protected
    Definition Classes
    Enumeration
  9. val alternateAllele: SchemaVal
  10. final def apply(x: Int): Value
    Definition Classes
    Enumeration
  11. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  12. val biotype: SchemaVal
  13. val cdnaLength: SchemaVal
  14. val cdnaPosition: SchemaVal
  15. val cdsLength: SchemaVal
  16. val cdsPosition: SchemaVal
  17. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native() @HotSpotIntrinsicCandidate()
  18. val distance: SchemaVal
  19. val effects: SchemaVal
  20. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  21. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  22. val featureId: SchemaVal
  23. val featureType: SchemaVal
  24. val geneId: SchemaVal
  25. val geneName: SchemaVal
  26. val genomicHgvs: SchemaVal
  27. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  28. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  29. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  30. final def maxId: Int
    Definition Classes
    Enumeration
  31. val messages: SchemaVal
  32. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  33. var nextId: Int
    Attributes
    protected
    Definition Classes
    Enumeration
  34. var nextName: Iterator[String]
    Attributes
    protected
    Definition Classes
    Enumeration
  35. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  36. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @HotSpotIntrinsicCandidate()
  37. val proteinHgvs: SchemaVal
  38. val proteinLength: SchemaVal
  39. val proteinPosition: SchemaVal
  40. val rank: SchemaVal
  41. def readResolve(): AnyRef
    Attributes
    protected
    Definition Classes
    Enumeration
  42. val recordSchema: Schema
    Definition Classes
    FieldEnumeration
  43. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  44. def toString(): String
    Definition Classes
    Enumeration → AnyRef → Any
  45. val total: SchemaVal
  46. val transcriptHgvs: SchemaVal
  47. def values: ValueSet
    Definition Classes
    Enumeration
  48. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  49. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  50. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  51. final def withName(s: String): Value
    Definition Classes
    Enumeration

Deprecated Value Members

  1. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
    Deprecated

    (Since version ) see corresponding Javadoc for more information.

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped