object CoverageDataset

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  4. def apply(rdd: RDD[Coverage], sd: SequenceDictionary, samples: Seq[Sample]): CoverageDataset

    A CoverageDataset that wraps an RDD of Coverage data given a sequence dictionary.

    A CoverageDataset that wraps an RDD of Coverage data given a sequence dictionary.

    rdd

    The underlying Coverage RDD to build from.

    sd

    The sequence dictionary for this CoverageDataset.

    samples

    The samples in this CoverageDataset.

    returns

    Returns a new CoverageDataset.

  5. def apply(rdd: RDD[Coverage]): CoverageDataset

    A CoverageDataset that wraps an RDD of Coverage data with an empty sequence dictionary.

    A CoverageDataset that wraps an RDD of Coverage data with an empty sequence dictionary.

    rdd

    The underlying Coverage RDD to build from.

    returns

    Returns a new CoverageDataset.

  6. def apply(ds: Dataset[Coverage], sequences: SequenceDictionary, samples: Seq[Sample]): CoverageDataset

    A GenomicDataset that wraps a dataset of Coverage data given a sequence dictionary.

    A GenomicDataset that wraps a dataset of Coverage data given a sequence dictionary.

    ds

    A Dataset of genomic Coverage features.

    sequences

    The reference genome these data are aligned to.

    samples

    The samples in this Dataset.

  7. def apply(ds: Dataset[Coverage]): CoverageDataset

    A GenomicDataset that wraps a dataset of Coverage data with an empty sequence dictionary.

    A GenomicDataset that wraps a dataset of Coverage data with an empty sequence dictionary.

    ds

    A Dataset of genomic Coverage features.

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