case class BAMInFormatter extends AnySAMInFormatter[BAMInFormatter] with Product with Serializable
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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final
def
==(arg0: Any): Boolean
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final
def
asInstanceOf[T0]: T0
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clone(): AnyRef
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val
companion: BAMInFormatter.type
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- protected
- Definition Classes
- BAMInFormatter → InFormatter
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val
converter: AlignmentConverter
A converter from Alignment to SAMRecord.
A converter from Alignment to SAMRecord.
- Definition Classes
- BAMInFormatter → AnySAMInFormatter
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final
def
eq(arg0: AnyRef): Boolean
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final
def
getClass(): Class[_]
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- @native() @HotSpotIntrinsicCandidate()
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val
header: SAMFileHeader
A serializable form of the SAM File Header.
A serializable form of the SAM File Header.
- Definition Classes
- BAMInFormatter → AnySAMInFormatter
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final
def
isInstanceOf[T0]: Boolean
- Definition Classes
- Any
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def
makeWriter(os: OutputStream): SAMFileWriter
- Attributes
- protected
- Definition Classes
- BAMInFormatter → AnySAMInFormatter
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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val
readGroups: ReadGroupDictionary
A dictionary describing the read groups these reads are from.
A dictionary describing the read groups these reads are from.
- Definition Classes
- BAMInFormatter → AnySAMInFormatter
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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final
def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
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final
def
wait(): Unit
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def
write(os: OutputStream, iter: Iterator[Alignment]): Unit
Writes alignments to an output stream in SAM format.
Writes alignments to an output stream in SAM format.
- os
An OutputStream connected to a process we are piping to.
- iter
An iterator of records to write.
- Definition Classes
- AnySAMInFormatter → InFormatter
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def
finalize(): Unit
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(Since version ) see corresponding Javadoc for more information.