case class VariantAnnotation(ancestralAllele: Option[String] = None, alleleCount: Option[Int] = None, readDepth: Option[Int] = None, forwardReadDepth: Option[Int] = None, reverseReadDepth: Option[Int] = None, referenceReadDepth: Option[Int] = None, referenceForwardReadDepth: Option[Int] = None, referenceReverseReadDepth: Option[Int] = None, alleleFrequency: Option[Float] = None, cigar: Option[String] = None, dbSnp: Option[Boolean] = None, hapMap2: Option[Boolean] = None, hapMap3: Option[Boolean] = None, validated: Option[Boolean] = None, thousandGenomes: Option[Boolean] = None, somatic: Option[Boolean] = None, transcriptEffects: Seq[TranscriptEffect] = Seq(), attributes: Map[String, String] = Map()) extends Product with Serializable
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Instance Constructors
- new VariantAnnotation(ancestralAllele: Option[String] = None, alleleCount: Option[Int] = None, readDepth: Option[Int] = None, forwardReadDepth: Option[Int] = None, reverseReadDepth: Option[Int] = None, referenceReadDepth: Option[Int] = None, referenceForwardReadDepth: Option[Int] = None, referenceReverseReadDepth: Option[Int] = None, alleleFrequency: Option[Float] = None, cigar: Option[String] = None, dbSnp: Option[Boolean] = None, hapMap2: Option[Boolean] = None, hapMap3: Option[Boolean] = None, validated: Option[Boolean] = None, thousandGenomes: Option[Boolean] = None, somatic: Option[Boolean] = None, transcriptEffects: Seq[TranscriptEffect] = Seq(), attributes: Map[String, String] = Map())
Value Members
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
- Definition Classes
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final
def
==(arg0: Any): Boolean
- Definition Classes
- AnyRef → Any
- val alleleCount: Option[Int]
- val alleleFrequency: Option[Float]
- val ancestralAllele: Option[String]
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final
def
asInstanceOf[T0]: T0
- Definition Classes
- Any
- val attributes: Map[String, String]
-
def
canEqual(that: Any): Boolean
- Definition Classes
- VariantAnnotation → Equals
- val cigar: Option[String]
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def
clone(): AnyRef
- Attributes
- protected[lang]
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- @throws( ... ) @native() @HotSpotIntrinsicCandidate()
- val dbSnp: Option[Boolean]
-
final
def
eq(arg0: AnyRef): Boolean
- Definition Classes
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- val forwardReadDepth: Option[Int]
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final
def
getClass(): Class[_]
- Definition Classes
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- @native() @HotSpotIntrinsicCandidate()
- val hapMap2: Option[Boolean]
- val hapMap3: Option[Boolean]
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final
def
isInstanceOf[T0]: Boolean
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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def
productArity: Int
- Definition Classes
- VariantAnnotation → Product
-
def
productElement(i: Int): Any
- Definition Classes
- VariantAnnotation → Product
- val readDepth: Option[Int]
- val referenceForwardReadDepth: Option[Int]
- val referenceReadDepth: Option[Int]
- val referenceReverseReadDepth: Option[Int]
- val reverseReadDepth: Option[Int]
- val somatic: Option[Boolean]
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final
def
synchronized[T0](arg0: ⇒ T0): T0
- Definition Classes
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- val thousandGenomes: Option[Boolean]
- def toAvro: formats.avro.VariantAnnotation
- val transcriptEffects: Seq[TranscriptEffect]
- val validated: Option[Boolean]
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final
def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
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final
def
wait(): Unit
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Deprecated Value Members
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def
finalize(): Unit
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- @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
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(Since version ) see corresponding Javadoc for more information.