t

org.bdgenomics.adam.ds

InFormatterCompanion

trait InFormatterCompanion[T, U <: Product, V <: GenomicDataset[T, U, V], W <: InFormatter[T, U, V, W]] extends AnyRef

A trait for singleton objects that build an InFormatter from a GenomicDataset.

Often, when creating an outputstream, we need to add metadata to the output that is not attached to individual records. An example of this is writing a header with contig/read group/format info, as is done with SAM/BAM/VCF.

T

The type of the records this InFormatter writes out.

U

The type of the GenomicDataset this companion object understands.

V

The type of InFormatter this companion object creates.

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Abstract Value Members

  1. abstract def apply(gDataset: V): W

    Creates an InFormatter from a GenomicDataset.

    Creates an InFormatter from a GenomicDataset.

    gDataset

    The GenomicDataset to get metadata from.

    returns

    Returns an InFormatter with attached metadata.

Concrete Value Members

  1. final def !=(arg0: Any): Boolean
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  2. final def ##(): Int
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  3. final def ==(arg0: Any): Boolean
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  5. def clone(): AnyRef
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  6. final def eq(arg0: AnyRef): Boolean
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  7. def equals(arg0: Any): Boolean
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  8. final def getClass(): Class[_]
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  9. def hashCode(): Int
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  10. final def isInstanceOf[T0]: Boolean
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  11. final def ne(arg0: AnyRef): Boolean
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  12. final def notify(): Unit
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  13. final def notifyAll(): Unit
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  14. final def synchronized[T0](arg0: ⇒ T0): T0
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  16. final def wait(arg0: Long, arg1: Int): Unit
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  1. def finalize(): Unit
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    @throws( classOf[java.lang.Throwable] ) @Deprecated @deprecated
    Deprecated

    (Since version ) see corresponding Javadoc for more information.

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