object ReadDataset

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  4. def apply(rdd: RDD[Read], sd: SequenceDictionary): ReadDataset

    Builds a ReadDataset given a sequence dictionary.

    Builds a ReadDataset given a sequence dictionary.

    rdd

    The underlying Read RDD to build from.

    sd

    The sequence dictionary for this ReadDataset.

    returns

    Returns a new ReadDataset.

  5. def apply(rdd: RDD[Read]): ReadDataset

    Builds a ReadDataset with an empty sequence dictionary.

    Builds a ReadDataset with an empty sequence dictionary.

    rdd

    The underlying Read RDD to build from.

    returns

    Returns a new ReadDataset.

  6. def apply(ds: Dataset[Read], sequences: SequenceDictionary): ReadDataset

    A genomic dataset that wraps a dataset of Read data.

    A genomic dataset that wraps a dataset of Read data.

    ds

    A Dataset of genomic Reads.

    sequences

    The reference genome these data are aligned to.

  7. def apply(ds: Dataset[Read]): ReadDataset

    A genomic dataset that wraps a dataset of Read data.

    A genomic dataset that wraps a dataset of Read data.

    ds

    A Dataset of genomic Reads.

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