package
java
Type Members
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final
class
AlignmentRecordsToAlignmentRecordsConverter extends Function2[AlignmentRecordDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
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final
class
AlignmentRecordsToContigsConverter extends Function2[AlignmentRecordDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
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final
class
AlignmentRecordsToCoverageConverter extends Function2[AlignmentRecordDataset, RDD[Coverage], CoverageDataset]
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final
class
AlignmentRecordsToFeaturesConverter extends Function2[AlignmentRecordDataset, RDD[Feature], FeatureDataset]
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final
class
AlignmentRecordsToFragmentsConverter extends Function2[AlignmentRecordDataset, RDD[Fragment], FragmentDataset]
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final
class
AlignmentRecordsToGenotypesConverter extends Function2[AlignmentRecordDataset, RDD[Genotype], GenotypeDataset]
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final
class
AlignmentRecordsToVariantContextConverter extends Function2[AlignmentRecordDataset, RDD[VariantContext], VariantContextDataset]
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final
class
AlignmentRecordsToVariantsConverter extends Function2[AlignmentRecordDataset, RDD[Variant], VariantDataset]
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final
class
ContigsToAlignmentRecordsConverter extends Function2[NucleotideContigFragmentDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
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final
class
ContigsToContigsConverter extends Function2[NucleotideContigFragmentDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
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final
class
ContigsToCoverageConverter extends Function2[NucleotideContigFragmentDataset, RDD[Coverage], CoverageDataset]
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final
class
ContigsToFeaturesConverter extends Function2[NucleotideContigFragmentDataset, RDD[Feature], FeatureDataset]
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final
class
ContigsToFragmentsConverter extends Function2[NucleotideContigFragmentDataset, RDD[Fragment], FragmentDataset]
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final
class
ContigsToGenotypesConverter extends Function2[NucleotideContigFragmentDataset, RDD[Genotype], GenotypeDataset]
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final
class
ContigsToVariantContextsConverter extends Function2[NucleotideContigFragmentDataset, RDD[VariantContext], VariantContextDataset]
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final
class
ContigsToVariantsConverter extends Function2[NucleotideContigFragmentDataset, RDD[Variant], VariantDataset]
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final
class
CoverageToAlignmentRecordsConverter extends Function2[CoverageDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
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final
class
CoverageToContigsConverter extends Function2[CoverageDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
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final
class
CoverageToCoverageConverter extends Function2[CoverageDataset, RDD[Coverage], CoverageDataset]
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final
class
CoverageToFeaturesConverter extends Function2[CoverageDataset, RDD[Feature], FeatureDataset]
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final
class
CoverageToFragmentsConverter extends Function2[CoverageDataset, RDD[Fragment], FragmentDataset]
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final
class
CoverageToGenotypesConverter extends Function2[CoverageDataset, RDD[Genotype], GenotypeDataset]
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final
class
CoverageToVariantContextConverter extends Function2[CoverageDataset, RDD[VariantContext], VariantContextDataset]
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final
class
CoverageToVariantsConverter extends Function2[CoverageDataset, RDD[Variant], VariantDataset]
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final
class
FeaturesToAlignmentRecordsConverter extends Function2[FeatureDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
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final
class
FeaturesToContigsConverter extends Function2[FeatureDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
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final
class
FeaturesToCoverageConverter extends Function2[FeatureDataset, RDD[Coverage], CoverageDataset]
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final
class
FeaturesToFeatureConverter extends Function2[FeatureDataset, RDD[Feature], FeatureDataset]
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final
class
FeaturesToFragmentsConverter extends Function2[FeatureDataset, RDD[Fragment], FragmentDataset]
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final
class
FeaturesToGenotypesConverter extends Function2[FeatureDataset, RDD[Genotype], GenotypeDataset]
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final
class
FeaturesToVariantContextConverter extends Function2[FeatureDataset, RDD[VariantContext], VariantContextDataset]
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final
class
FeaturesToVariantsConverter extends Function2[FeatureDataset, RDD[Variant], VariantDataset]
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final
class
FragmentsToAlignmentRecordsConverter extends Function2[FragmentDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
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final
class
FragmentsToContigsConverter extends Function2[FragmentDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
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final
class
FragmentsToCoverageConverter extends Function2[FragmentDataset, RDD[Coverage], CoverageDataset]
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final
class
FragmentsToFeaturesConverter extends Function2[FragmentDataset, RDD[Feature], FeatureDataset]
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final
class
FragmentsToFragmentsConverter extends Function2[FragmentDataset, RDD[Fragment], FragmentDataset]
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final
class
FragmentsToGenotypesConverter extends Function2[FragmentDataset, RDD[Genotype], GenotypeDataset]
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final
class
FragmentsToVariantContextConverter extends Function2[FragmentDataset, RDD[VariantContext], VariantContextDataset]
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final
class
FragmentsToVariantsConverter extends Function2[FragmentDataset, RDD[Variant], VariantDataset]
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final
class
GenotypesToAlignmentRecordsConverter extends Function2[GenotypeDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
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final
class
GenotypesToContigsConverter extends Function2[GenotypeDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
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final
class
GenotypesToCoverageConverter extends Function2[GenotypeDataset, RDD[Coverage], CoverageDataset]
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final
class
GenotypesToFeaturesConverter extends Function2[GenotypeDataset, RDD[Feature], FeatureDataset]
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final
class
GenotypesToFragmentsConverter extends Function2[GenotypeDataset, RDD[Fragment], FragmentDataset]
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final
class
GenotypesToGenotypesConverter extends Function2[GenotypeDataset, RDD[Genotype], GenotypeDataset]
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final
class
GenotypesToVariantContextConverter extends Function2[GenotypeDataset, RDD[VariantContext], VariantContextDataset]
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final
class
GenotypesToVariantsConverter extends Function2[GenotypeDataset, RDD[Variant], VariantDataset]
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trait
ToAlignmentRecordDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, AlignmentRecord, AlignmentRecord, AlignmentRecordDataset]
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trait
ToContigDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, NucleotideContigFragment, NucleotideContigFragment, NucleotideContigFragmentDataset]
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trait
ToCoverageDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Coverage, Coverage, CoverageDataset]
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trait
ToFeatureDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Feature, Feature, FeatureDataset]
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trait
ToFragmentDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Fragment, Fragment, FragmentDataset]
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trait
ToGenotypeDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Genotype, Genotype, GenotypeDataset]
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trait
ToVariantContextDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, VariantContext, VariantContext, VariantContextDataset]
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trait
ToVariantDatasetConversion[T, U <: Product, V <: GenomicDataset[T, U, V]] extends GenomicDatasetConversion[T, U, V, Variant, Variant, VariantDataset]
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final
class
VariantContextsToAlignmentRecordsConverter extends Function2[VariantContextDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
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final
class
VariantContextsToContigsConverter extends Function2[VariantContextDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
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final
class
VariantContextsToCoverageConverter extends Function2[VariantContextDataset, RDD[Coverage], CoverageDataset]
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final
class
VariantContextsToFeaturesConverter extends Function2[VariantContextDataset, RDD[Feature], FeatureDataset]
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final
class
VariantContextsToFragmentsConverter extends Function2[VariantContextDataset, RDD[Fragment], FragmentDataset]
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final
class
VariantContextsToGenotypesConverter extends Function2[VariantContextDataset, RDD[Genotype], GenotypeDataset]
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final
class
VariantContextsToVariantContextConverter extends Function2[VariantContextDataset, RDD[VariantContext], VariantContextDataset]
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final
class
VariantContextsToVariantsConverter extends Function2[VariantContextDataset, RDD[Variant], VariantDataset]
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final
class
VariantsToAlignmentRecordsConverter extends Function2[VariantDataset, RDD[AlignmentRecord], AlignmentRecordDataset]
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final
class
VariantsToContigsConverter extends Function2[VariantDataset, RDD[NucleotideContigFragment], NucleotideContigFragmentDataset]
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final
class
VariantsToCoverageConverter extends Function2[VariantDataset, RDD[Coverage], CoverageDataset]
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final
class
VariantsToFeaturesConverter extends Function2[VariantDataset, RDD[Feature], FeatureDataset]
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final
class
VariantsToFragmentsConverter extends Function2[VariantDataset, RDD[Fragment], FragmentDataset]
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final
class
VariantsToGenotypesConverter extends Function2[VariantDataset, RDD[Genotype], GenotypeDataset]
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final
class
VariantsToVariantContextConverter extends Function2[VariantDataset, RDD[VariantContext], VariantContextDataset]
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final
class
VariantsToVariantsConverter extends Function2[VariantDataset, RDD[Variant], VariantDataset]
Value Members
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