Metadata-Version: 2.4
Name: mutyper
Version: 1.0.2
Summary: ancestral k-mer mutation types for SNP data
Home-page: https://github.com/harrispopgen/mutyper
Author: William DeWitt
Author-email: wsdewitt@gmail.com
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: cyvcf2>=0.30.15
Requires-Dist: pyfaidx
Requires-Dist: biopython
Requires-Dist: pandas
Requires-Dist: pyliftover
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Dynamic: author-email
Dynamic: classifier
Dynamic: description
Dynamic: description-content-type
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![](docs/_static/logo.png)

A Python package and command line utility for annotating the local ancestral sequence context of biallelic SNPs

[![Build and test](https://github.com/harrispopgen/mutyper/actions/workflows/build-and-test.yml/badge.svg)](https://github.com/harrispopgen/mutyper/actions/workflows/build-and-test.yml)
[![Docs build and deploy](https://github.com/harrispopgen/mutyper/actions/workflows/docs-build-and-deploy.yml/badge.svg)](https://github.com/harrispopgen/mutyper/actions/workflows/docs-build-and-deploy.yml)
[![Python package](https://github.com/harrispopgen/mutyper/actions/workflows/python-publish.yml/badge.svg)](https://github.com/harrispopgen/mutyper/actions/workflows/python-publish.yml)
[![status](https://joss.theoj.org/papers/db2fb9b0e9fa1b380ff75655796e7bf1/status.svg)](https://joss.theoj.org/papers/db2fb9b0e9fa1b380ff75655796e7bf1)

#### See [documentation](https://harrispopgen.github.io/mutyper) for install and usage information.

Pairs well with the package [`mushi`](https://github.com/harrispopgen/mushi), which performs mutation spectrum history inference.
