Tools for extracting individual genomes from metagenomes

Documentation for package ‘mmgenome’ version 0.7.1

mmgenome-package	mmgenome: multi-metagenome
mmadd	Add data to any mmgenome object
mmexport	Exports scaffolds in fasta format
mmextract	Extracts a subset of scaffolds
mmextract_network	Extract scaffolds connected by paired-end reads
mmformat_esom	Format raw esom data for use in mmgenome
mmformat_ppsp	Format ppsp data for use in mmgenome
mmgenome	mmgenome: multi-metagenome
mmimport	Import data
mmload	Data loading function
mmplot	Function to visualise metagenomes
mmplot_locator	Interactively define a selection subspace on mmplot or mmplot_network
mmplot_network	Plots connected scaffolds in a network
mmplot_pairs	Generates a ggplot2 style pairs plot
mmplot_selection	Highlight subsets
mmref	Compare essential genes in a bin to a group of references
mmstats	Calculates summary statistics on a set of scaffolds
mmsubset	Subset scaffolds