Genomewide Epistasis Analysis on Bacteria
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Documentation for package ‘LDWeaver’ version 1.1.1
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| .mat | .mat |
| .rescale01 | .rescale01 |
| ._legendfun2 | ._legendfun2 |
| analyse_long_range_links | analyse_long_range_links |
| cleanup | cleanup |
| cleanup_support | cleanup_support |
| create_network | create_network |
| create_network_for_gene | create_network_for_gene |
| create_tanglegram | create_tanglegram |
| estimate_Hamming_distance_weights | estimate_Hamming_distance_weights |
| estimate_variation_in_CDS | estimate_variation_in_CDS |
| generate_Links_SNPS_fasta | generate_Links_SNPS_fasta |
| genomewide_LDMap | genomewide_LDMap |
| LDWeaver | LDWeaver |
| make_gwes_plots | make_gwes_plots |
| parse_fasta_alignment | extractSNPs |
| parse_genbank_file | parse_genbank_file |
| parse_gff_file | parse_gff_file |
| perform_MI_computation | perform_MI_computation |
| perform_snpEff_annotations | perform_snpEff_annotations |
| read_AnnotatedLinks | read_AnnotatedLinks |
| read_GFF3_Annotation | read_GFF3_Annotation |
| read_LongRangeLinks | read_LongRangeLinks |
| read_ReferenceFasta | read_ReferenceFasta |
| read_ShortRangeLinks | read_ShortRangeLinks |
| read_TopHits | read_TopHits |
| runARACNE | runARACNE |
| snpdat_to_fa | snpdat_to_fa |
| view_tree | view_tree |
| write_output_for_gwes_explorer | write_output_for_gwes_explorer |