Fast, Sensitive, and Accurate Integration of Single Cell Data
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Documentation for package ‘harmony’ version 1.0
Help Pages
| harmony-package | Harmony: fast, accurate, and robust single cell integration. |
| cell_lines | List of metadata table and scaled PCs matrix |
| cell_lines_small | Same as cell_lines but smaller (300 cells). |
| cell_lines_small_sce | Same as cell_lines_small but as SingleCellExperiment object. Expression matrices filled in with dummy values. |
| cell_lines_small_seurat_v2 | Same as cell_lines_small but as Seurat Version 2 object. Expression matrices filled in with dummy values. |
| cell_lines_small_seurat_v3 | Same as cell_lines_small but as Seurat Version 3 object. Expression matrices filled in with dummy values. |
| harmony | Harmony: fast, accurate, and robust single cell integration. |
| HarmonyMatrix | Main Harmony interface |
| RunHarmony | Harmony single cell integration |
| RunHarmony.Seurat | Harmony single cell integration |
| RunHarmony.seurat | Harmony single cell integration |
| RunHarmony.SingleCellExperiment | Harmony single cell integration |