Fast, Sensitive, and Accurate Integration of Single Cell Data

Documentation for package ‘harmony’ version 1.0

harmony-package	Harmony: fast, accurate, and robust single cell integration.
cell_lines	List of metadata table and scaled PCs matrix
cell_lines_small	Same as cell_lines but smaller (300 cells).
cell_lines_small_sce	Same as cell_lines_small but as SingleCellExperiment object. Expression matrices filled in with dummy values.
cell_lines_small_seurat_v2	Same as cell_lines_small but as Seurat Version 2 object. Expression matrices filled in with dummy values.
cell_lines_small_seurat_v3	Same as cell_lines_small but as Seurat Version 3 object. Expression matrices filled in with dummy values.
harmony	Harmony: fast, accurate, and robust single cell integration.
HarmonyMatrix	Main Harmony interface
RunHarmony	Harmony single cell integration
RunHarmony.Seurat	Harmony single cell integration
RunHarmony.seurat	Harmony single cell integration
RunHarmony.SingleCellExperiment	Harmony single cell integration