include/genesis/CMakeLists.txt
include/genesis/genesis.hpp
include/genesis/placement.hpp
include/genesis/placement/formats/edge_color.cpp
include/genesis/placement/formats/edge_color.hpp
include/genesis/placement/formats/jplace_reader.cpp
include/genesis/placement/formats/jplace_reader.hpp
include/genesis/placement/formats/jplace_writer.cpp
include/genesis/placement/formats/jplace_writer.hpp
include/genesis/placement/formats/newick_reader.hpp
include/genesis/placement/formats/newick_writer.hpp
include/genesis/placement/formats/serializer.cpp
include/genesis/placement/formats/serializer.hpp
include/genesis/placement/function/cog.cpp
include/genesis/placement/function/cog.hpp
include/genesis/placement/function/distances.cpp
include/genesis/placement/function/distances.hpp
include/genesis/placement/function/emd.cpp
include/genesis/placement/function/emd.hpp
include/genesis/placement/function/epca.cpp
include/genesis/placement/function/epca.hpp
include/genesis/placement/function/functions.cpp
include/genesis/placement/function/functions.hpp
include/genesis/placement/function/helper.cpp
include/genesis/placement/function/helper.hpp
include/genesis/placement/function/manipulation.cpp
include/genesis/placement/function/manipulation.hpp
include/genesis/placement/function/masses.cpp
include/genesis/placement/function/masses.hpp
include/genesis/placement/function/measures.cpp
include/genesis/placement/function/measures.hpp
include/genesis/placement/function/nhd.cpp
include/genesis/placement/function/nhd.hpp
include/genesis/placement/function/operators.cpp
include/genesis/placement/function/operators.hpp
include/genesis/placement/function/sample_set.cpp
include/genesis/placement/function/sample_set.hpp
include/genesis/placement/function/tree.cpp
include/genesis/placement/function/tree.hpp
include/genesis/placement/placement_tree.hpp
include/genesis/placement/pquery.cpp
include/genesis/placement/pquery.hpp
include/genesis/placement/pquery/name.hpp
include/genesis/placement/pquery/placement.hpp
include/genesis/placement/pquery/plain.hpp
include/genesis/placement/sample.cpp
include/genesis/placement/sample.hpp
include/genesis/placement/sample_set.hpp
include/genesis/placement/simulator/distributions.cpp
include/genesis/placement/simulator/distributions.hpp
include/genesis/placement/simulator/functions.cpp
include/genesis/placement/simulator/functions.hpp
include/genesis/placement/simulator/simulator.cpp
include/genesis/placement/simulator/simulator.hpp
include/genesis/population.hpp
include/genesis/population/filter/filter_stats.hpp
include/genesis/population/filter/filter_status.hpp
include/genesis/population/filter/sample_counts_filter.cpp
include/genesis/population/filter/sample_counts_filter.hpp
include/genesis/population/filter/sample_counts_filter_numerical.cpp
include/genesis/population/filter/sample_counts_filter_numerical.hpp
include/genesis/population/filter/sample_counts_filter_positional.hpp
include/genesis/population/filter/variant_filter.cpp
include/genesis/population/filter/variant_filter.hpp
include/genesis/population/filter/variant_filter_numerical.cpp
include/genesis/population/filter/variant_filter_numerical.hpp
include/genesis/population/filter/variant_filter_positional.hpp
include/genesis/population/format/bed_reader.cpp
include/genesis/population/format/bed_reader.hpp
include/genesis/population/format/frequency_table_input_stream.cpp
include/genesis/population/format/frequency_table_input_stream.hpp
include/genesis/population/format/genome_region_reader.cpp
include/genesis/population/format/genome_region_reader.hpp
include/genesis/population/format/gff_reader.cpp
include/genesis/population/format/gff_reader.hpp
include/genesis/population/format/hts_file.cpp
include/genesis/population/format/hts_file.hpp
include/genesis/population/format/map_bim_reader.cpp
include/genesis/population/format/map_bim_reader.hpp
include/genesis/population/format/sam_flags.cpp
include/genesis/population/format/sam_flags.hpp
include/genesis/population/format/sam_variant_input_stream.cpp
include/genesis/population/format/sam_variant_input_stream.hpp
include/genesis/population/format/simple_pileup_common.cpp
include/genesis/population/format/simple_pileup_common.hpp
include/genesis/population/format/simple_pileup_input_stream.hpp
include/genesis/population/format/simple_pileup_reader.cpp
include/genesis/population/format/simple_pileup_reader.hpp
include/genesis/population/format/sync_common.cpp
include/genesis/population/format/sync_common.hpp
include/genesis/population/format/sync_input_stream.hpp
include/genesis/population/format/sync_reader.cpp
include/genesis/population/format/sync_reader.hpp
include/genesis/population/format/vcf_common.cpp
include/genesis/population/format/vcf_common.hpp
include/genesis/population/format/vcf_format_iterator.cpp
include/genesis/population/format/vcf_format_iterator.hpp
include/genesis/population/format/vcf_header.cpp
include/genesis/population/format/vcf_header.hpp
include/genesis/population/format/vcf_input_stream.cpp
include/genesis/population/format/vcf_input_stream.hpp
include/genesis/population/format/vcf_record.cpp
include/genesis/population/format/vcf_record.hpp
include/genesis/population/function/diversity_pool_calculator.hpp
include/genesis/population/function/diversity_pool_functions.cpp
include/genesis/population/function/diversity_pool_functions.hpp
include/genesis/population/function/diversity_pool_processor.hpp
include/genesis/population/function/fst_cathedral.cpp
include/genesis/population/function/fst_cathedral.hpp
include/genesis/population/function/fst_pool_calculator.hpp
include/genesis/population/function/fst_pool_functions.hpp
include/genesis/population/function/fst_pool_karlsson.hpp
include/genesis/population/function/fst_pool_kofler.hpp
include/genesis/population/function/fst_pool_processor.hpp
include/genesis/population/function/fst_pool_unbiased.hpp
include/genesis/population/function/functions.cpp
include/genesis/population/function/functions.hpp
include/genesis/population/function/genome_locus.hpp
include/genesis/population/function/genome_locus_set.cpp
include/genesis/population/function/genome_locus_set.hpp
include/genesis/population/function/genome_region.cpp
include/genesis/population/function/genome_region.hpp
include/genesis/population/function/subsample.cpp
include/genesis/population/function/subsample.hpp
include/genesis/population/function/variant_input_stream.cpp
include/genesis/population/function/variant_input_stream.hpp
include/genesis/population/function/window_average.hpp
include/genesis/population/genome_locus.hpp
include/genesis/population/genome_locus_set.cpp
include/genesis/population/genome_locus_set.hpp
include/genesis/population/genome_region.hpp
include/genesis/population/genome_region_list.hpp
include/genesis/population/plotting/af_spectrum.cpp
include/genesis/population/plotting/af_spectrum.hpp
include/genesis/population/plotting/cathedral_plot.cpp
include/genesis/population/plotting/cathedral_plot.hpp
include/genesis/population/plotting/genome_heatmap.cpp
include/genesis/population/plotting/genome_heatmap.hpp
include/genesis/population/plotting/heatmap_colorization.cpp
include/genesis/population/plotting/heatmap_colorization.hpp
include/genesis/population/sample_counts.hpp
include/genesis/population/stream/variant_gapless_input_stream.cpp
include/genesis/population/stream/variant_gapless_input_stream.hpp
include/genesis/population/stream/variant_input_stream.hpp
include/genesis/population/stream/variant_input_stream_adapters.cpp
include/genesis/population/stream/variant_input_stream_adapters.hpp
include/genesis/population/stream/variant_input_stream_sources.cpp
include/genesis/population/stream/variant_input_stream_sources.hpp
include/genesis/population/stream/variant_parallel_input_stream.cpp
include/genesis/population/stream/variant_parallel_input_stream.hpp
include/genesis/population/variant.hpp
include/genesis/population/window/base_window.hpp
include/genesis/population/window/base_window_stream.hpp
include/genesis/population/window/chromosome_window_stream.hpp
include/genesis/population/window/functions.hpp
include/genesis/population/window/genome_window_stream.hpp
include/genesis/population/window/interval_window_stream.hpp
include/genesis/population/window/position_window_stream.hpp
include/genesis/population/window/queue_window_stream.hpp
include/genesis/population/window/region_window_stream.hpp
include/genesis/population/window/sliding_window_generator.hpp
include/genesis/population/window/variant_window_stream.hpp
include/genesis/population/window/vcf_window.hpp
include/genesis/population/window/window.hpp
include/genesis/population/window/window_view.hpp
include/genesis/population/window/window_view_stream.hpp
include/genesis/sequence.hpp
include/genesis/sequence/counts.cpp
include/genesis/sequence/counts.hpp
include/genesis/sequence/formats/fai_input_stream.hpp
include/genesis/sequence/formats/fasta_reader.cpp
include/genesis/sequence/formats/fasta_reader.hpp
include/genesis/sequence/formats/fasta_writer.cpp
include/genesis/sequence/formats/fasta_writer.hpp
include/genesis/sequence/formats/fastq_reader.cpp
include/genesis/sequence/formats/fastq_reader.hpp
include/genesis/sequence/formats/fastq_writer.cpp
include/genesis/sequence/formats/fastq_writer.hpp
include/genesis/sequence/formats/fastx_input_stream.hpp
include/genesis/sequence/formats/fastx_input_view_stream.hpp
include/genesis/sequence/formats/fastx_output_stream.hpp
include/genesis/sequence/formats/phylip_reader.cpp
include/genesis/sequence/formats/phylip_reader.hpp
include/genesis/sequence/formats/phylip_writer.cpp
include/genesis/sequence/formats/phylip_writer.hpp
include/genesis/sequence/functions/codes.cpp
include/genesis/sequence/functions/codes.hpp
include/genesis/sequence/functions/consensus.cpp
include/genesis/sequence/functions/consensus.hpp
include/genesis/sequence/functions/dict.cpp
include/genesis/sequence/functions/dict.hpp
include/genesis/sequence/functions/entropy.cpp
include/genesis/sequence/functions/entropy.hpp
include/genesis/sequence/functions/functions.cpp
include/genesis/sequence/functions/functions.hpp
include/genesis/sequence/functions/labels.cpp
include/genesis/sequence/functions/labels.hpp
include/genesis/sequence/functions/quality.cpp
include/genesis/sequence/functions/quality.hpp
include/genesis/sequence/functions/signature_specifications.cpp
include/genesis/sequence/functions/signature_specifications.hpp
include/genesis/sequence/functions/signatures.cpp
include/genesis/sequence/functions/signatures.hpp
include/genesis/sequence/functions/stats.cpp
include/genesis/sequence/functions/stats.hpp
include/genesis/sequence/kmer/alphabet.cpp
include/genesis/sequence/kmer/alphabet.hpp
include/genesis/sequence/kmer/bitfield.cpp
include/genesis/sequence/kmer/bitfield.hpp
include/genesis/sequence/kmer/canonical_encoding.cpp
include/genesis/sequence/kmer/canonical_encoding.hpp
include/genesis/sequence/kmer/color_gamut.cpp
include/genesis/sequence/kmer/color_gamut.hpp
include/genesis/sequence/kmer/color_gamut_functions.cpp
include/genesis/sequence/kmer/color_gamut_functions.hpp
include/genesis/sequence/kmer/extractor.hpp
include/genesis/sequence/kmer/function.hpp
include/genesis/sequence/kmer/kmer.hpp
include/genesis/sequence/kmer/microvariant_scanner.hpp
include/genesis/sequence/printers/bitmap.cpp
include/genesis/sequence/printers/bitmap.hpp
include/genesis/sequence/printers/simple.cpp
include/genesis/sequence/printers/simple.hpp
include/genesis/sequence/reference_genome.hpp
include/genesis/sequence/sequence.hpp
include/genesis/sequence/sequence_dict.hpp
include/genesis/sequence/sequence_set.hpp
include/genesis/taxonomy.hpp
include/genesis/taxonomy/accession_lookup.hpp
include/genesis/taxonomy/formats/accession_lookup_reader.hpp
include/genesis/taxonomy/formats/json_reader.cpp
include/genesis/taxonomy/formats/json_reader.hpp
include/genesis/taxonomy/formats/json_writer.cpp
include/genesis/taxonomy/formats/json_writer.hpp
include/genesis/taxonomy/formats/ncbi.cpp
include/genesis/taxonomy/formats/ncbi.hpp
include/genesis/taxonomy/formats/taxonomy_reader.cpp
include/genesis/taxonomy/formats/taxonomy_reader.hpp
include/genesis/taxonomy/formats/taxonomy_writer.cpp
include/genesis/taxonomy/formats/taxonomy_writer.hpp
include/genesis/taxonomy/formats/taxopath_generator.cpp
include/genesis/taxonomy/formats/taxopath_generator.hpp
include/genesis/taxonomy/formats/taxopath_parser.cpp
include/genesis/taxonomy/formats/taxopath_parser.hpp
include/genesis/taxonomy/functions/entropy.cpp
include/genesis/taxonomy/functions/entropy.hpp
include/genesis/taxonomy/functions/entropy_data.hpp
include/genesis/taxonomy/functions/kmer.cpp
include/genesis/taxonomy/functions/kmer.hpp
include/genesis/taxonomy/functions/kmer_data.hpp
include/genesis/taxonomy/functions/kmer_grouping.cpp
include/genesis/taxonomy/functions/kmer_grouping.hpp
include/genesis/taxonomy/functions/kmer_partitioning.cpp
include/genesis/taxonomy/functions/kmer_partitioning.hpp
include/genesis/taxonomy/functions/operators.hpp
include/genesis/taxonomy/functions/ranks.cpp
include/genesis/taxonomy/functions/ranks.hpp
include/genesis/taxonomy/functions/taxonomy.cpp
include/genesis/taxonomy/functions/taxonomy.hpp
include/genesis/taxonomy/functions/taxopath.cpp
include/genesis/taxonomy/functions/taxopath.hpp
include/genesis/taxonomy/functions/tree.cpp
include/genesis/taxonomy/functions/tree.hpp
include/genesis/taxonomy/iterator/levelorder.hpp
include/genesis/taxonomy/iterator/postorder.hpp
include/genesis/taxonomy/iterator/preorder.hpp
include/genesis/taxonomy/printers/nested.cpp
include/genesis/taxonomy/printers/nested.hpp
include/genesis/taxonomy/taxon.hpp
include/genesis/taxonomy/taxon_data.hpp
include/genesis/taxonomy/taxonomy.cpp
include/genesis/taxonomy/taxonomy.hpp
include/genesis/taxonomy/taxopath.hpp
include/genesis/tree.hpp
include/genesis/tree/attribute_tree/indexed_newick_reader.cpp
include/genesis/tree/attribute_tree/indexed_newick_reader.hpp
include/genesis/tree/attribute_tree/keyed_newick_reader.cpp
include/genesis/tree/attribute_tree/keyed_newick_reader.hpp
include/genesis/tree/attribute_tree/tree.hpp
include/genesis/tree/bipartition/bipartition.hpp
include/genesis/tree/bipartition/functions.cpp
include/genesis/tree/bipartition/functions.hpp
include/genesis/tree/bipartition/rf.cpp
include/genesis/tree/bipartition/rf.hpp
include/genesis/tree/common_tree/distances.cpp
include/genesis/tree/common_tree/distances.hpp
include/genesis/tree/common_tree/edge_color.cpp
include/genesis/tree/common_tree/edge_color.hpp
include/genesis/tree/common_tree/functions.cpp
include/genesis/tree/common_tree/functions.hpp
include/genesis/tree/common_tree/newick_reader.hpp
include/genesis/tree/common_tree/newick_writer.hpp
include/genesis/tree/common_tree/operators.cpp
include/genesis/tree/common_tree/operators.hpp
include/genesis/tree/common_tree/phyloxml_writer.hpp
include/genesis/tree/common_tree/tree.hpp
include/genesis/tree/drawing/circular_layout.cpp
include/genesis/tree/drawing/circular_layout.hpp
include/genesis/tree/drawing/functions.cpp
include/genesis/tree/drawing/functions.hpp
include/genesis/tree/drawing/heat_tree.cpp
include/genesis/tree/drawing/heat_tree.hpp
include/genesis/tree/drawing/layout_base.cpp
include/genesis/tree/drawing/layout_base.hpp
include/genesis/tree/drawing/layout_tree.hpp
include/genesis/tree/drawing/rectangular_layout.cpp
include/genesis/tree/drawing/rectangular_layout.hpp
include/genesis/tree/formats/color_writer_plugin.hpp
include/genesis/tree/formats/newick/broker.cpp
include/genesis/tree/formats/newick/broker.hpp
include/genesis/tree/formats/newick/color_writer_plugin.hpp
include/genesis/tree/formats/newick/element.hpp
include/genesis/tree/formats/newick/input_iterator.hpp
include/genesis/tree/formats/newick/reader.cpp
include/genesis/tree/formats/newick/reader.hpp
include/genesis/tree/formats/newick/simple_reader.hpp
include/genesis/tree/formats/newick/simple_tree.hpp
include/genesis/tree/formats/newick/simple_writer.hpp
include/genesis/tree/formats/newick/writer.cpp
include/genesis/tree/formats/newick/writer.hpp
include/genesis/tree/formats/phyloxml/color_writer_plugin.hpp
include/genesis/tree/formats/phyloxml/writer.cpp
include/genesis/tree/formats/phyloxml/writer.hpp
include/genesis/tree/formats/table/reader.cpp
include/genesis/tree/formats/table/reader.hpp
include/genesis/tree/function/accumulate.hpp
include/genesis/tree/function/distances.cpp
include/genesis/tree/function/distances.hpp
include/genesis/tree/function/functions.cpp
include/genesis/tree/function/functions.hpp
include/genesis/tree/function/lca_lookup.cpp
include/genesis/tree/function/lca_lookup.hpp
include/genesis/tree/function/manipulation.cpp
include/genesis/tree/function/manipulation.hpp
include/genesis/tree/function/operators.cpp
include/genesis/tree/function/operators.hpp
include/genesis/tree/function/tree_set.cpp
include/genesis/tree/function/tree_set.hpp
include/genesis/tree/iterator/eulertour.hpp
include/genesis/tree/iterator/levelorder.hpp
include/genesis/tree/iterator/node_links.hpp
include/genesis/tree/iterator/path.hpp
include/genesis/tree/iterator/path_set.hpp
include/genesis/tree/iterator/postorder.hpp
include/genesis/tree/iterator/preorder.hpp
include/genesis/tree/mass_tree/balances.cpp
include/genesis/tree/mass_tree/balances.hpp
include/genesis/tree/mass_tree/emd.cpp
include/genesis/tree/mass_tree/emd.hpp
include/genesis/tree/mass_tree/functions.cpp
include/genesis/tree/mass_tree/functions.hpp
include/genesis/tree/mass_tree/kmeans.cpp
include/genesis/tree/mass_tree/kmeans.hpp
include/genesis/tree/mass_tree/phylo_factor.cpp
include/genesis/tree/mass_tree/phylo_factor.hpp
include/genesis/tree/mass_tree/phylo_factor_colors.cpp
include/genesis/tree/mass_tree/phylo_factor_colors.hpp
include/genesis/tree/mass_tree/phylo_ilr.cpp
include/genesis/tree/mass_tree/phylo_ilr.hpp
include/genesis/tree/mass_tree/squash_clustering.cpp
include/genesis/tree/mass_tree/squash_clustering.hpp
include/genesis/tree/mass_tree/tree.hpp
include/genesis/tree/printer/compact.cpp
include/genesis/tree/printer/compact.hpp
include/genesis/tree/printer/detailed.cpp
include/genesis/tree/printer/detailed.hpp
include/genesis/tree/printer/table.cpp
include/genesis/tree/printer/table.hpp
include/genesis/tree/tree.cpp
include/genesis/tree/tree.hpp
include/genesis/tree/tree/edge.hpp
include/genesis/tree/tree/edge_data.hpp
include/genesis/tree/tree/link.hpp
include/genesis/tree/tree/node.hpp
include/genesis/tree/tree/node_data.hpp
include/genesis/tree/tree/subtree.hpp
include/genesis/tree/tree_set.hpp
include/genesis/utils.hpp
include/genesis/utils/bit/bit.hpp
include/genesis/utils/bit/bitvector.cpp
include/genesis/utils/bit/bitvector.hpp
include/genesis/utils/bit/bitvector/functions.cpp
include/genesis/utils/bit/bitvector/functions.hpp
include/genesis/utils/bit/bitvector/operators.cpp
include/genesis/utils/bit/bitvector/operators.hpp
include/genesis/utils/bit/twobit_vector.cpp
include/genesis/utils/bit/twobit_vector.hpp
include/genesis/utils/bit/twobit_vector/functions.cpp
include/genesis/utils/bit/twobit_vector/functions.hpp
include/genesis/utils/bit/twobit_vector/iterator_deletions.hpp
include/genesis/utils/bit/twobit_vector/iterator_insertions.hpp
include/genesis/utils/bit/twobit_vector/iterator_substitutions.hpp
include/genesis/utils/color/color.cpp
include/genesis/utils/color/color.hpp
include/genesis/utils/color/functions.cpp
include/genesis/utils/color/functions.hpp
include/genesis/utils/color/heat_map.cpp
include/genesis/utils/color/heat_map.hpp
include/genesis/utils/color/helpers.cpp
include/genesis/utils/color/helpers.hpp
include/genesis/utils/color/list_diverging.cpp
include/genesis/utils/color/list_diverging.hpp
include/genesis/utils/color/list_misc.cpp
include/genesis/utils/color/list_misc.hpp
include/genesis/utils/color/list_qualitative.cpp
include/genesis/utils/color/list_qualitative.hpp
include/genesis/utils/color/list_sequential.cpp
include/genesis/utils/color/list_sequential.hpp
include/genesis/utils/color/map.cpp
include/genesis/utils/color/map.hpp
include/genesis/utils/color/names.cpp
include/genesis/utils/color/names.hpp
include/genesis/utils/color/norm_boundary.hpp
include/genesis/utils/color/norm_diverging.hpp
include/genesis/utils/color/norm_linear.hpp
include/genesis/utils/color/norm_logarithmic.hpp
include/genesis/utils/color/normalization.hpp
include/genesis/utils/containers/bitpacked_vector.hpp
include/genesis/utils/containers/dataframe.hpp
include/genesis/utils/containers/dataframe/operators.cpp
include/genesis/utils/containers/dataframe/operators.hpp
include/genesis/utils/containers/dataframe/reader.hpp
include/genesis/utils/containers/deref_iterator.hpp
include/genesis/utils/containers/filter_iterator.hpp
include/genesis/utils/containers/function_cache.hpp
include/genesis/utils/containers/generic_input_stream.hpp
include/genesis/utils/containers/hash_tuple.hpp
include/genesis/utils/containers/interval_tree.hpp
include/genesis/utils/containers/interval_tree/functions.hpp
include/genesis/utils/containers/interval_tree/fwd.hpp
include/genesis/utils/containers/interval_tree/interval.hpp
include/genesis/utils/containers/interval_tree/iterator.hpp
include/genesis/utils/containers/interval_tree/node.hpp
include/genesis/utils/containers/matrix.hpp
include/genesis/utils/containers/matrix/col.hpp
include/genesis/utils/containers/matrix/operators.cpp
include/genesis/utils/containers/matrix/operators.hpp
include/genesis/utils/containers/matrix/reader.hpp
include/genesis/utils/containers/matrix/row.hpp
include/genesis/utils/containers/matrix/simple_reader.hpp
include/genesis/utils/containers/matrix/writer.hpp
include/genesis/utils/containers/mru_cache.hpp
include/genesis/utils/containers/optional.hpp
include/genesis/utils/containers/range.hpp
include/genesis/utils/containers/transform_iterator.hpp
include/genesis/utils/core/algorithm.hpp
include/genesis/utils/core/exception.hpp
include/genesis/utils/core/fs.cpp
include/genesis/utils/core/fs.hpp
include/genesis/utils/core/info.cpp
include/genesis/utils/core/info.hpp
include/genesis/utils/core/logging.cpp
include/genesis/utils/core/logging.hpp
include/genesis/utils/core/options.hpp
include/genesis/utils/core/resource_logger.hpp
include/genesis/utils/core/std.hpp
include/genesis/utils/core/version.hpp
include/genesis/utils/formats/bmp/writer.cpp
include/genesis/utils/formats/bmp/writer.hpp
include/genesis/utils/formats/csv/input_iterator.hpp
include/genesis/utils/formats/csv/reader.cpp
include/genesis/utils/formats/csv/reader.hpp
include/genesis/utils/formats/json/document.cpp
include/genesis/utils/formats/json/document.hpp
include/genesis/utils/formats/json/iterator.hpp
include/genesis/utils/formats/json/reader.cpp
include/genesis/utils/formats/json/reader.hpp
include/genesis/utils/formats/json/writer.cpp
include/genesis/utils/formats/json/writer.hpp
include/genesis/utils/formats/nexus/block.cpp
include/genesis/utils/formats/nexus/block.hpp
include/genesis/utils/formats/nexus/document.cpp
include/genesis/utils/formats/nexus/document.hpp
include/genesis/utils/formats/nexus/taxa.hpp
include/genesis/utils/formats/nexus/trees.hpp
include/genesis/utils/formats/nexus/writer.cpp
include/genesis/utils/formats/nexus/writer.hpp
include/genesis/utils/formats/svg/attributes.cpp
include/genesis/utils/formats/svg/attributes.hpp
include/genesis/utils/formats/svg/axis.cpp
include/genesis/utils/formats/svg/axis.hpp
include/genesis/utils/formats/svg/color_bar.cpp
include/genesis/utils/formats/svg/color_bar.hpp
include/genesis/utils/formats/svg/definitions.hpp
include/genesis/utils/formats/svg/document.cpp
include/genesis/utils/formats/svg/document.hpp
include/genesis/utils/formats/svg/gradient.cpp
include/genesis/utils/formats/svg/gradient.hpp
include/genesis/utils/formats/svg/group.cpp
include/genesis/utils/formats/svg/group.hpp
include/genesis/utils/formats/svg/helper.cpp
include/genesis/utils/formats/svg/helper.hpp
include/genesis/utils/formats/svg/image.cpp
include/genesis/utils/formats/svg/image.hpp
include/genesis/utils/formats/svg/matrix.cpp
include/genesis/utils/formats/svg/matrix.hpp
include/genesis/utils/formats/svg/object.hpp
include/genesis/utils/formats/svg/pie_chart.cpp
include/genesis/utils/formats/svg/pie_chart.hpp
include/genesis/utils/formats/svg/shapes.cpp
include/genesis/utils/formats/svg/shapes.hpp
include/genesis/utils/formats/svg/svg.hpp
include/genesis/utils/formats/svg/text.cpp
include/genesis/utils/formats/svg/text.hpp
include/genesis/utils/formats/xml/document.cpp
include/genesis/utils/formats/xml/document.hpp
include/genesis/utils/formats/xml/helper.cpp
include/genesis/utils/formats/xml/helper.hpp
include/genesis/utils/formats/xml/writer.cpp
include/genesis/utils/formats/xml/writer.hpp
include/genesis/utils/io/base64.cpp
include/genesis/utils/io/base64.hpp
include/genesis/utils/io/base_input_source.hpp
include/genesis/utils/io/base_output_target.hpp
include/genesis/utils/io/deserializer.hpp
include/genesis/utils/io/file_input_source.hpp
include/genesis/utils/io/file_output_target.hpp
include/genesis/utils/io/gzip.cpp
include/genesis/utils/io/gzip.hpp
include/genesis/utils/io/gzip_block_ostream.cpp
include/genesis/utils/io/gzip_block_ostream.hpp
include/genesis/utils/io/gzip_input_source.cpp
include/genesis/utils/io/gzip_input_source.hpp
include/genesis/utils/io/gzip_output_target.hpp
include/genesis/utils/io/gzip_stream.cpp
include/genesis/utils/io/gzip_stream.hpp
include/genesis/utils/io/input_buffer.hpp
include/genesis/utils/io/input_reader.hpp
include/genesis/utils/io/input_source.hpp
include/genesis/utils/io/input_stream.cpp
include/genesis/utils/io/input_stream.hpp
include/genesis/utils/io/output_stream.hpp
include/genesis/utils/io/output_target.hpp
include/genesis/utils/io/parser.cpp
include/genesis/utils/io/parser.hpp
include/genesis/utils/io/scanner.hpp
include/genesis/utils/io/serializer.hpp
include/genesis/utils/io/stream_input_source.hpp
include/genesis/utils/io/stream_output_target.hpp
include/genesis/utils/io/strict_fstream.cpp
include/genesis/utils/io/strict_fstream.hpp
include/genesis/utils/io/string_input_source.hpp
include/genesis/utils/io/string_output_target.hpp
include/genesis/utils/math/binomial.cpp
include/genesis/utils/math/binomial.hpp
include/genesis/utils/math/common.hpp
include/genesis/utils/math/compensated_sum.hpp
include/genesis/utils/math/correlation.cpp
include/genesis/utils/math/correlation.hpp
include/genesis/utils/math/distance.cpp
include/genesis/utils/math/distance.hpp
include/genesis/utils/math/distribution.cpp
include/genesis/utils/math/distribution.hpp
include/genesis/utils/math/euclidean_kmeans.cpp
include/genesis/utils/math/euclidean_kmeans.hpp
include/genesis/utils/math/hac.hpp
include/genesis/utils/math/hac/functions.hpp
include/genesis/utils/math/hac/linkage.hpp
include/genesis/utils/math/histogram.cpp
include/genesis/utils/math/histogram.hpp
include/genesis/utils/math/histogram/accumulator.cpp
include/genesis/utils/math/histogram/accumulator.hpp
include/genesis/utils/math/histogram/distances.cpp
include/genesis/utils/math/histogram/distances.hpp
include/genesis/utils/math/histogram/operations.cpp
include/genesis/utils/math/histogram/operations.hpp
include/genesis/utils/math/histogram/operators.cpp
include/genesis/utils/math/histogram/operators.hpp
include/genesis/utils/math/histogram/stats.cpp
include/genesis/utils/math/histogram/stats.hpp
include/genesis/utils/math/kmeans.hpp
include/genesis/utils/math/matrix.cpp
include/genesis/utils/math/matrix.hpp
include/genesis/utils/math/mds.cpp
include/genesis/utils/math/mds.hpp
include/genesis/utils/math/moments.hpp
include/genesis/utils/math/pca.cpp
include/genesis/utils/math/pca.hpp
include/genesis/utils/math/random.cpp
include/genesis/utils/math/random.hpp
include/genesis/utils/math/range_minimum_query.cpp
include/genesis/utils/math/range_minimum_query.hpp
include/genesis/utils/math/ranking.hpp
include/genesis/utils/math/regression/dataframe.cpp
include/genesis/utils/math/regression/dataframe.hpp
include/genesis/utils/math/regression/factor.hpp
include/genesis/utils/math/regression/family.hpp
include/genesis/utils/math/regression/glm.cpp
include/genesis/utils/math/regression/glm.hpp
include/genesis/utils/math/regression/helper.cpp
include/genesis/utils/math/regression/helper.hpp
include/genesis/utils/math/regression/link.hpp
include/genesis/utils/math/regression/slr.hpp
include/genesis/utils/math/statistics.hpp
include/genesis/utils/text/char.cpp
include/genesis/utils/text/char.hpp
include/genesis/utils/text/convert.cpp
include/genesis/utils/text/convert.hpp
include/genesis/utils/text/light_string.hpp
include/genesis/utils/text/string.cpp
include/genesis/utils/text/string.hpp
include/genesis/utils/text/style.cpp
include/genesis/utils/text/style.hpp
include/genesis/utils/text/table.cpp
include/genesis/utils/text/table.hpp
include/genesis/utils/threading/blocking_concurrent_queue.hpp
include/genesis/utils/threading/concurrent_queue.hpp
include/genesis/utils/threading/concurrent_vector_guard.hpp
include/genesis/utils/threading/lightweight_semaphore.hpp
include/genesis/utils/threading/multi_future.hpp
include/genesis/utils/threading/sequential_output_buffer.hpp
include/genesis/utils/threading/serial_task_queue.hpp
include/genesis/utils/threading/thread_functions.hpp
include/genesis/utils/threading/thread_local_cache.hpp
include/genesis/utils/threading/thread_pool.hpp
include/genesis/utils/threading/threadsafe_queue.hpp
include/genesis/utils/tools/char_lookup.hpp
include/genesis/utils/tools/date_time.cpp
include/genesis/utils/tools/date_time.hpp
include/genesis/utils/tools/geodesy/functions.cpp
include/genesis/utils/tools/geodesy/functions.hpp
include/genesis/utils/tools/geodesy/geo_coordinate.hpp
include/genesis/utils/tools/hash/functions.cpp
include/genesis/utils/tools/hash/functions.hpp
include/genesis/utils/tools/hash/md5.cpp
include/genesis/utils/tools/hash/md5.hpp
include/genesis/utils/tools/hash/sha1.cpp
include/genesis/utils/tools/hash/sha1.hpp
include/genesis/utils/tools/hash/sha256.cpp
include/genesis/utils/tools/hash/sha256.hpp
include/genesis/utils/tools/tickmarks.cpp
include/genesis/utils/tools/tickmarks.hpp
include/genesis/utils/tools/timer.hpp
lib/libgenesis.so
