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bin/aa-to-properties.py
bin/adaptor-distances.py
bin/alignment-panel-civ.py
bin/alignments-per-read.py
bin/bit-score-to-e-value.py
bin/cat-json-blast-records.py
bin/check-fasta-json-blast-consistency.py
bin/codon-distance.py
bin/combine-sequences.py
bin/compare-aa-sequences.py
bin/compare-consensuses.py
bin/compare-sequences.py
bin/convert-blast-xml-to-json.py
bin/convert-diamond-to-json.py
bin/convert-diamond-to-sam.py
bin/convert-sam-to-fastq.sh
bin/create-newick-relabeling-output.py
bin/curate-tree-ete3.py
bin/curate-trees.py
bin/dark-matter-version.py
bin/describe-protein-database.py
bin/dna-to-aa.py
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bin/e-value-to-bit-score.py
bin/extract-ORFs.py
bin/fasta-base-indices.py
bin/fasta-count-chars.py
bin/fasta-count.py
bin/fasta-coverage.py
bin/fasta-diff.sh
bin/fasta-find.py
bin/fasta-identity-table.py
bin/fasta-ids.py
bin/fasta-join.py
bin/fasta-lengths.py
bin/fasta-match-offsets.py
bin/fasta-sequences.py
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bin/fasta-split-by-id.py
bin/fasta-split-by-length.py
bin/fasta-split.py
bin/fasta-subset.py
bin/fasta-subtraction.py
bin/fasta-to-phylip.py
bin/fasta-translate.py
bin/fasta-variable-sites.py
bin/fastq-set-quality.py
bin/filter-fasta-by-complexity.py
bin/filter-fasta-by-taxonomy.py
bin/filter-fasta.py
bin/filter-hits-to-fasta.py
bin/filter-reads-alignments.py
bin/filter-sam.py
bin/format-fasta.py
bin/genbank-grep.py
bin/genome-protein-summary.py
bin/get-features.py
bin/get-hosts.py
bin/get-reads.py
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bin/local-align.py
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bin/ncbi-fetch-id.py
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bin/noninteractive-alignment-panel.py
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bin/plot-references-by-inter-read-distance.py
bin/plot-windowed-identity.py
bin/position-summary.py
bin/pre-commit.sh
bin/print-read-lengths.py
bin/proteins-to-pathogens-civ.py
bin/proteins-to-pathogens.py
bin/randomize-fasta.py
bin/read-blast-json.py
bin/read-blast-xml.py
bin/reference-read-scores-to-JSON.py
bin/relabel-newick-tree.py
bin/remove-alrt-from-tree.py
bin/reverse-complement.py
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bin/translate.py
bin/tree-info.py
bin/trim-primers.py
bin/trim-reads.py
bin/window-split-alignment.py
bin/write-htcondor-job-spec.py
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