Class/Object

org.bdgenomics.adam.sql

Contig

Related Docs: object Contig | package sql

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case class Contig(contigName: Option[String] = None, contigLength: Option[Long] = None, contigMD5: Option[String] = None, referenceURL: Option[String] = None, assembly: Option[String] = None, species: Option[String] = None, referenceIndex: Option[Int] = None) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. Contig
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Contig(contigName: Option[String] = None, contigLength: Option[Long] = None, contigMD5: Option[String] = None, referenceURL: Option[String] = None, assembly: Option[String] = None, species: Option[String] = None, referenceIndex: Option[Int] = None)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  5. val assembly: Option[String]

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  6. def canEqual(that: Any): Boolean

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    Definition Classes
    Contig → Equals
  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  8. val contigLength: Option[Long]

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  9. val contigMD5: Option[String]

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  10. val contigName: Option[String]

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  11. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  12. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  13. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  14. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  15. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  16. final def notify(): Unit

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    Definition Classes
    AnyRef
  17. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  18. def productArity: Int

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    Definition Classes
    Contig → Product
  19. def productElement(i: Int): Any

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    Definition Classes
    Contig → Product
  20. val referenceIndex: Option[Int]

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  21. val referenceURL: Option[String]

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  22. val species: Option[String]

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  23. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  24. def toAvro: formats.avro.Contig

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  25. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  26. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  27. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped