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org.bdgenomics.adam.rdd.feature

CoverageRDD

Related Docs: class CoverageRDD | package feature

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object CoverageRDD

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  4. def apply(rdd: RDD[Coverage], sd: SequenceDictionary, samples: Seq[Sample]): CoverageRDD

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    Builds a CoverageRDD given a sequence dictionary.

    Builds a CoverageRDD given a sequence dictionary.

    rdd

    The underlying Coverage RDD to build from.

    sd

    The sequence dictionary for this Coverage RDD.

    samples

    The samples in this Coverage RDD.

    returns

    Returns a new CoverageRDD.

  5. def apply(rdd: RDD[Coverage]): CoverageRDD

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    Builds a CoverageRDD with an empty sequence dictionary.

    Builds a CoverageRDD with an empty sequence dictionary.

    rdd

    The underlying Coverage RDD to build from.

    returns

    Returns a new CoverageRDD.

  6. def apply(ds: Dataset[Coverage], sequences: SequenceDictionary, samples: Seq[Sample]): CoverageRDD

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    A GenomicRDD that wraps a dataset of Coverage data.

    A GenomicRDD that wraps a dataset of Coverage data.

    ds

    A Dataset of genomic Coverage features.

    sequences

    The reference genome these data are aligned to.

    samples

    The samples in this Dataset.

  7. def apply(ds: Dataset[Coverage]): CoverageRDD

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    A GenomicRDD that wraps a dataset of Coverage data.

    A GenomicRDD that wraps a dataset of Coverage data.

    ds

    A Dataset of genomic Coverage features.

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