Class/Object

org.bdgenomics.adam.sql

Variant

Related Docs: object Variant | package sql

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case class Variant(contigName: Option[String] = None, start: Option[Long] = None, end: Option[Long] = None, names: Seq[String] = Seq(), splitFromMultiAllelic: Option[Boolean] = None, referenceAllele: Option[String] = None, alternateAllele: Option[String] = None, quality: Option[Double] = None, filtersApplied: Option[Boolean] = None, filtersPassed: Option[Boolean] = None, filtersFailed: Seq[String] = Seq(), annotation: Option[VariantAnnotation] = None) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. Variant
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new Variant(contigName: Option[String] = None, start: Option[Long] = None, end: Option[Long] = None, names: Seq[String] = Seq(), splitFromMultiAllelic: Option[Boolean] = None, referenceAllele: Option[String] = None, alternateAllele: Option[String] = None, quality: Option[Double] = None, filtersApplied: Option[Boolean] = None, filtersPassed: Option[Boolean] = None, filtersFailed: Seq[String] = Seq(), annotation: Option[VariantAnnotation] = None)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. val alternateAllele: Option[String]

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  5. val annotation: Option[VariantAnnotation]

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  6. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  7. def canEqual(that: Any): Boolean

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    Definition Classes
    Variant → Equals
  8. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  9. val contigName: Option[String]

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  10. val end: Option[Long]

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  11. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  12. val filtersApplied: Option[Boolean]

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  13. val filtersFailed: Seq[String]

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  14. val filtersPassed: Option[Boolean]

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  15. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  16. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  17. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  18. val names: Seq[String]

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  19. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  20. final def notify(): Unit

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    Definition Classes
    AnyRef
  21. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  22. def productArity: Int

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    Definition Classes
    Variant → Product
  23. def productElement(i: Int): Any

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    Definition Classes
    Variant → Product
  24. val quality: Option[Double]

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  25. val referenceAllele: Option[String]

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  26. val splitFromMultiAllelic: Option[Boolean]

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  27. val start: Option[Long]

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  28. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  29. def toAvro: formats.avro.Variant

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  30. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  31. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  32. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped