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| analyseQ | Analyse STRUCTURE, TESS, BAPS or BASIC text runs. Wrapper around several smaller functions. |
| checkQ | Internal: Check input filetype. |
| clumppExport | Generate CLUMPP output from a qlist |
| collectClumppOutput | Collect CLUMPP output files from multiple folders |
| collectRunsTess | Collect TESS cluster run files from multiple folders |
| distructColors | Internal: Vector of 90 Distruct colours |
| distructColours | Internal: Vector of 90 Distruct colours |
| distructExport | Generate files for DISTRUCT. |
| evannoMethodStructure | Perform the Evanno method for STRUCTURE runs. |
| getColors | Internal: Generate colours based on number of K |
| getDim | Internal: Get dimensions for figures. |
| getOS | Internal: Find current OS |
| getPlotParams | Internal: Generate parameters for plots with labels |
| grpLabels | Internal: Handles grp subset/order |
| is.qlist | Verify if a qlist is formatted correctly. |
| plotQ | Generate barplots from qlists. |
| plotQMultiline | Plot a qlist as individual-level multiline barplot |
| readQ | Convert run files (q-matrices) to qlist. |
| readQBaps | Convert BAPS cluster files to qlist. |
| readQBasic | Convert delimited text files to qlist. |
| readQClumpp | Convert CLUMPP format numeric text files to qlist. |
| readQStructure | Convert STRUCTURE run files to qlist. |
| readQTess | Convert TESS cluster files to qlist. |
| readQTess3 | Convert TESS3 R object to pophelper qlist. |
| sortInd | Internal: Handles individual sorting |
| summariseQ | Summarise a tabulated dataframe |
| summarizeQ | Summarise a tabulated dataframe |
| tabulateQ | Tabulate runs from a qlist |
| unitConverter | Internal: Convert value between dimension units |
| verifyGrplab | Verify if a grplab dataframe is formatted correctly. |