Class

org.bdgenomics.cannoli.builder

CommandBuilder

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abstract class CommandBuilder extends Serializable

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  1. CommandBuilder
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Instance Constructors

  1. new CommandBuilder(executable: String)

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    Attributes
    protected[org.bdgenomics.cannoli.builder]
  2. new CommandBuilder()

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    Attributes
    protected[org.bdgenomics.cannoli.builder]

Abstract Value Members

  1. abstract def build(): List[String]

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Concrete Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def add(arguments: Iterable[String]): CommandBuilder

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  5. final def add(arguments: <repeated...>[String]): CommandBuilder

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  6. final def addArgument(argument: String): CommandBuilder

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  7. final def addArguments(arguments: Iterable[String]): CommandBuilder

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  8. final def addArguments(arguments: <repeated...>[String]): CommandBuilder

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  9. final def addEnvironment(environment: Map[String, String]): CommandBuilder

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  10. final def addEnvironment(variable: String, value: String): CommandBuilder

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  11. final def addFile(file: String): CommandBuilder

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  12. final def addFiles(files: Iterable[String]): CommandBuilder

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  13. final def addFiles(files: <repeated...>[String]): CommandBuilder

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  14. final def addMount(source: String, target: String): CommandBuilder

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  15. final def addMount(mount: String): CommandBuilder

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  16. final def addMounts(mounts: Map[String, String]): CommandBuilder

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  17. final def asInstanceOf[T0]: T0

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  18. def clone(): AnyRef

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    protected[java.lang]
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  19. final def eq(arg0: AnyRef): Boolean

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  20. def equals(arg0: Any): Boolean

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  21. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )
  22. final def getArguments(): List[String]

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  23. final def getClass(): Class[_]

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  24. final def getEnvironment(): Map[String, String]

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  25. final def getExecutable(): String

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  26. final def getFiles(): List[String]

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  27. final def getFlankSize(): Integer

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  28. final def getImage(): String

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  29. final def getMounts(): Map[String, String]

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  30. final def getOptFlankSize(): Optional[Integer]

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  31. final def getOptTimeout(): Optional[Long]

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  32. final def getSudo(): Boolean

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  33. final def getTimeout(): Long

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  34. def hashCode(): Int

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  35. final def isInstanceOf[T0]: Boolean

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  36. final def isSudo(): Boolean

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  37. final def ne(arg0: AnyRef): Boolean

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  38. final def notify(): Unit

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  39. final def notifyAll(): Unit

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  40. final def reset(): CommandBuilder

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  41. final def setExecutable(executable: String): CommandBuilder

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  42. final def setFlankSize(flankSize: Integer): CommandBuilder

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  43. final def setImage(image: String): CommandBuilder

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  44. final def setSudo(sudo: Boolean): CommandBuilder

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  45. final def setTimeout(duration: Long, timeUnit: TimeUnit): CommandBuilder

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  46. final def setTimeout(timeout: Long): CommandBuilder

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  47. final def synchronized[T0](arg0: ⇒ T0): T0

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  48. def toString(): String

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  49. final def wait(): Unit

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    @throws( ... )
  50. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )
  51. final def wait(arg0: Long): Unit

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Inherited from Serializable

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